Atp6v0c (ATPase H+ transporting V0 subunit c) - Rat Genome Database

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Gene: Atp6v0c (ATPase H+ transporting V0 subunit c) Heterocephalus glaber
Analyze
Symbol: Atp6v0c
Name: ATPase H+ transporting V0 subunit c
RGD ID: 18924410
Description: ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN negative regulation of autophagic cell death (ortholog); positive regulation of ERK1 and ERK2 cascade (ortholog); positive regulation of Wnt signaling pathway (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 1 (ortholog); early-onset epilepsy 3 (ortholog); epilepsy (ortholog); FOUND IN proton-transporting V-type ATPase complex (ortholog); synaptic vesicle (ortholog); synaptic vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase 16 kDa proteolipid subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624824267,102 - 272,893 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624824267,102 - 272,893 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Atp6v0c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624824267,102 - 272,893 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624824267,102 - 272,893 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATP6V0C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38162,513,726 - 2,520,218 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl162,513,952 - 2,520,218 (+)EnsemblGRCh38hg38GRCh38
GRCh37162,563,727 - 2,570,219 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,503,954 - 2,510,220 (+)NCBINCBI36Build 36hg18NCBI36
Build 34162,503,953 - 2,510,219NCBI
Celera162,755,525 - 2,785,155 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef162,489,699 - 2,496,194 (+)NCBIHuRef
CHM1_1162,563,664 - 2,570,161 (+)NCBICHM1_1
T2T-CHM13v2.0162,535,856 - 2,542,340 (+)NCBIT2T-CHM13v2.0
Atp6v0c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,382,839 - 24,388,652 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,382,840 - 24,388,676 (-)EnsemblGRCm39 Ensembl
GRCm381724,163,865 - 24,169,678 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,163,866 - 24,169,702 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,300,833 - 24,306,374 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361723,891,488 - 23,897,029 (-)NCBIMGSCv36mm8
Celera1724,669,200 - 24,674,661 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.29NCBI
Atp6v0c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,700,764 - 13,707,147 (-)NCBIGRCr8
mRatBN7.21013,196,204 - 13,202,580 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,196,204 - 13,201,500 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1017,941,023 - 17,946,085 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,429,860 - 17,434,922 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,928,324 - 12,933,402 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,537,031 - 13,543,407 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,537,033 - 13,542,077 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,352,991 - 13,359,367 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,415,671 - 13,420,715 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11013,415,670 - 13,420,715 (-)NCBI
Celera1012,882,252 - 12,887,296 (-)NCBICelera
Cytogenetic Map10q12NCBI
Atp6v0c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544214,791,795 - 14,798,066 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544214,791,795 - 14,798,066 (-)NCBIChiLan1.0ChiLan1.0
ATP6V0C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2183,015,432 - 3,021,889 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,796,438 - 6,802,895 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0161,370,460 - 1,376,775 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,613,096 - 2,619,204 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,613,096 - 2,619,204 (+)Ensemblpanpan1.1panPan2
ATP6V0C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,519,869 - 38,525,217 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,520,765 - 38,525,062 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,758,250 - 39,763,598 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0638,829,102 - 38,834,450 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl638,829,102 - 38,834,443 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,514,259 - 38,519,609 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,486,868 - 38,492,219 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0638,962,951 - 38,968,303 (-)NCBIUU_Cfam_GSD_1.0
Atp6v0c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,167,247 - 105,173,070 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366941,536,393 - 1,542,218 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1339,532,707 - 39,538,704 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,700,733 - 42,706,549 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V0C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,387,891 - 2,394,111 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl52,387,812 - 2,394,180 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606828,630,936 - 28,637,307 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000007881   ⟹   ENSHGLP00000007795
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624824267,102 - 272,893 (+)Ensembl
RefSeq Acc Id: XM_004864655   ⟹   XP_004864712
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624824267,102 - 272,893 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004864712 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA99239 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007795
  ENSHGLP00100004321
GenBank Protein JAO02543 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004864712   ⟸   XM_004864655
- UniProtKB: G5AQC9 (UniProtKB/TrEMBL),   G5AUQ0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000007795   ⟸   ENSHGLT00000007881


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005657 Ensembl, ENTREZGENE
  ENSHGLG00100003276 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000007881 ENTREZGENE
  ENSHGLT00100004388 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.610 UniProtKB/TrEMBL
InterPro ATPase_proteolipid_c-like_dom UniProtKB/TrEMBL
  ATPase_proteolipid_csu UniProtKB/TrEMBL
  ATPase_proteolipid_su_C_euk UniProtKB/TrEMBL
  F/V-ATP_Csub_sf UniProtKB/TrEMBL
KEGG Report hgl:101709243 UniProtKB/TrEMBL
NCBI Gene Atp6v0c ENTREZGENE
PANTHER V-TYPE PROTON ATPASE 16 KDA PROTEOLIPID SUBUNIT UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT UniProtKB/TrEMBL
Pfam ATP-synt_C UniProtKB/TrEMBL
PRINTS VACATPASE UniProtKB/TrEMBL
Superfamily-SCOP SSF81333 UniProtKB/TrEMBL
UniProt G5AQC9 ENTREZGENE, UniProtKB/TrEMBL
  G5AUQ0 ENTREZGENE, UniProtKB/TrEMBL