Cntn2 (contactin 2) - Rat Genome Database

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Gene: Cntn2 (contactin 2) Heterocephalus glaber
Analyze
Symbol: Cntn2
Name: contactin 2
RGD ID: 18924130
Description: ENCODES a protein that exhibits carbohydrate binding (ortholog); cell adhesion mediator activity (ortholog); INVOLVED IN adult walking behavior (ortholog); axon guidance (ortholog); axonal fasciculation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN axon initial segment (ortholog); cell surface (ortholog); juxtaparanode region of axon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: contactin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248076,056,339 - 6,073,588 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248076,052,591 - 6,080,421 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Cntn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248076,056,339 - 6,073,588 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248076,052,591 - 6,080,421 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CNTN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381205,042,949 - 205,078,289 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1205,042,937 - 205,078,289 (+)EnsemblGRCh38hg38GRCh38
GRCh371205,012,077 - 205,047,417 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361203,278,963 - 203,313,761 (+)NCBINCBI36Build 36hg18NCBI36
Build 341201,743,996 - 201,778,793NCBI
Celera1178,147,407 - 178,182,200 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1176,177,847 - 176,212,673 (+)NCBIHuRef
CHM1_11206,435,687 - 206,470,502 (+)NCBICHM1_1
T2T-CHM13v2.01204,307,317 - 204,342,659 (+)NCBIT2T-CHM13v2.0
Cntn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,437,163 - 132,470,989 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1132,437,165 - 132,470,994 (-)EnsemblGRCm39 Ensembl
GRCm381132,509,425 - 132,543,251 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,509,427 - 132,543,256 (-)EnsemblGRCm38mm10GRCm38
MGSCv371134,406,002 - 134,439,517 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361134,336,973 - 134,370,462 (-)NCBIMGSCv36mm8
Celera1135,118,092 - 135,152,003 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.42NCBI
Cntn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81346,497,269 - 46,528,112 (-)NCBIGRCr8
mRatBN7.21343,942,868 - 43,975,973 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1343,947,265 - 43,975,887 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1346,554,249 - 46,582,887 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01347,842,379 - 47,871,008 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01345,103,086 - 45,131,717 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01349,280,913 - 49,314,061 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1349,285,310 - 49,313,940 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01354,356,315 - 54,389,667 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41345,399,915 - 45,428,789 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11345,413,957 - 45,442,832 (-)NCBI
Celera1344,281,845 - 44,310,387 (-)NCBICelera
Cytogenetic Map13q13NCBI
Cntn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540640,831,850 - 40,858,569 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540640,831,897 - 40,862,445 (+)NCBIChiLan1.0ChiLan1.0
CNTN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2144,298,727 - 44,333,562 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1144,264,002 - 44,298,806 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01180,645,259 - 180,680,081 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11184,931,902 - 184,966,482 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1184,931,497 - 184,966,482 (+)Ensemblpanpan1.1panPan2
CNTN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1381,570,598 - 1,600,524 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl381,576,898 - 1,596,621 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha381,661,917 - 1,694,727 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0381,564,191 - 1,597,016 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl381,563,948 - 1,596,983 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1381,560,461 - 1,593,270 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0381,951,695 - 1,980,625 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0382,151,770 - 2,184,597 (+)NCBIUU_Cfam_GSD_1.0
Cntn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934470,057,146 - 70,080,384 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365577,297,422 - 7,320,846 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365577,297,429 - 7,320,666 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNTN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl965,736,740 - 65,776,396 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1965,737,488 - 65,776,412 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CNTN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12524,262,092 - 24,296,740 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2524,261,651 - 24,296,850 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605525,018,404 - 25,053,686 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000027396   ⟹   ENSHGLP00000027155
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248076,056,339 - 6,073,588 (-)Ensembl
RefSeq Acc Id: XM_004862129   ⟹   XP_004862186
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248076,056,944 - 6,080,421 (-)NCBI
RefSeq Acc Id: XM_013078632   ⟹   XP_012934086
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248076,052,591 - 6,080,343 (-)NCBI
RefSeq Acc Id: XM_021242458   ⟹   XP_021098117
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248076,052,591 - 6,080,407 (-)NCBI
RefSeq Acc Id: XM_021242459   ⟹   XP_021098118
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248076,052,591 - 6,080,407 (-)NCBI
RefSeq Acc Id: XR_002388622
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248076,052,591 - 6,080,411 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004862186 (Get FASTA)   NCBI Sequence Viewer  
  XP_012934086 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098117 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098118 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027155
RefSeq Acc Id: XP_021098117   ⟸   XM_021242458
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RN96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098118   ⟸   XM_021242459
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RN96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012934086   ⟸   XM_013078632
- Peptide Label: isoform X2
- UniProtKB: G5B2D4 (UniProtKB/TrEMBL),   A0AAX6R8F9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004862186   ⟸   XM_004862129
- Peptide Label: isoform X3
- UniProtKB: G5B2D4 (UniProtKB/TrEMBL),   A0AAX6PZE5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000027155   ⟸   ENSHGLT00000027396


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019314 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027396 ENTREZGENE
Gene3D-CATH Immunoglobulins UniProtKB/TrEMBL
InterPro Contactin-1_2_Ig1 UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
NCBI Gene Cntn2 ENTREZGENE
PANTHER CONTACTIN-2 UniProtKB/TrEMBL
  PROTEIN SIDEKICK UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP Fibronectin type III UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/TrEMBL
UniProt A0AAX6PZE5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6R8F9 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RN96 ENTREZGENE, UniProtKB/TrEMBL
  G5B2D4 ENTREZGENE, UniProtKB/TrEMBL