Atp6v0d1 (ATPase H+ transporting V0 subunit d1) - Rat Genome Database

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Gene: Atp6v0d1 (ATPase H+ transporting V0 subunit d1) Heterocephalus glaber
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Symbol: Atp6v0d1
Name: ATPase H+ transporting V0 subunit d1
RGD ID: 18921099
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); proton-transporting ATPase activity, rotational mechanism (ortholog); INVOLVED IN cellular response to increased oxygen levels (ortholog); intracellular iron ion homeostasis (ortholog); synaptic vesicle lumen acidification (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); cardiomyopathy (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN apical plasma membrane (ortholog); axon terminus (ortholog); centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase subunit d 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,828,024 - 18,883,128 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,828,025 - 18,883,128 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp6v0d1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,828,024 - 18,883,128 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,828,025 - 18,883,128 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATP6V0D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,438,019 - 67,481,157 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,438,014 - 67,481,181 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,471,922 - 67,515,060 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,029,418 - 66,072,590 (-)NCBINCBI36Build 36hg18NCBI36
Build 341666,029,425 - 66,072,589NCBI
Celera1651,980,121 - 52,023,291 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,345,066 - 53,388,217 (-)NCBIHuRef
CHM1_11668,879,298 - 68,922,471 (-)NCBICHM1_1
T2T-CHM13v2.01673,232,795 - 73,275,929 (-)NCBIT2T-CHM13v2.0
Atp6v0d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,251,093 - 106,292,696 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,251,097 - 106,292,679 (-)EnsemblGRCm39 Ensembl
GRCm388105,524,461 - 105,566,064 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,524,465 - 105,566,047 (-)EnsemblGRCm38mm10GRCm38
MGSCv378108,048,370 - 108,089,940 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,413,599 - 108,455,169 (-)NCBIMGSCv36mm8
Celera8109,747,720 - 109,789,272 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Atp6v0d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,313,268 - 50,357,248 (-)NCBIGRCr8
mRatBN7.21933,403,352 - 33,447,357 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,403,355 - 33,447,450 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,218,940 - 40,262,920 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01940,872,276 - 40,916,256 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,169,948 - 43,214,030 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,481,782 - 37,525,762 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,481,782 - 37,525,762 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,347,540 - 48,391,661 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,342,041 - 35,386,025 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11935,346,923 - 35,390,906 (-)NCBI
Celera1932,831,706 - 32,875,649 (-)NCBICelera
Cytogenetic Map19q12NCBI
Atp6v0d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,167,439 - 9,206,193 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,167,439 - 9,206,193 (+)NCBIChiLan1.0ChiLan1.0
ATP6V0D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21876,967,580 - 77,010,506 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11682,880,224 - 82,923,123 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,783,327 - 47,826,138 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,171,883 - 67,214,670 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,171,883 - 67,214,670 (-)Ensemblpanpan1.1panPan2
ATP6V0D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,926,589 - 81,965,959 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,926,612 - 81,965,526 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,916,255 - 81,955,624 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,361,885 - 82,401,257 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,361,853 - 82,401,254 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,188,035 - 82,227,401 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,869,135 - 81,908,503 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,512,585 - 82,551,949 (+)NCBIUU_Cfam_GSD_1.0
Atp6v0d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,661,672 - 41,700,328 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647517,886,371 - 17,927,557 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647517,888,788 - 17,927,513 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,090,183 - 28,131,985 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,090,180 - 28,132,080 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,357,269 - 25,399,102 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V0D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,976,118 - 60,018,414 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl560,002,544 - 60,017,894 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604722,725,086 - 22,767,799 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000016154   ⟹   ENSHGLP00000015986
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474618,828,024 - 18,883,128 (+)Ensembl
RefSeq Acc Id: XM_004843032   ⟹   XP_004843089
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474618,828,029 - 18,883,128 (+)NCBI
RefSeq Acc Id: XM_021256862   ⟹   XP_021112521
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474618,828,025 - 18,883,128 (+)NCBI
RefSeq Acc Id: XM_021256863   ⟹   XP_021112522
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474618,828,025 - 18,883,128 (+)NCBI
RefSeq Acc Id: XM_021256864   ⟹   XP_021112523
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474618,828,025 - 18,883,128 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004843089 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112521 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112522 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112523 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015986
GenBank Protein JAO03021 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021112521   ⟸   XM_021256862
- Peptide Label: isoform X1
- UniProtKB: A0AAX6SW26 (UniProtKB/TrEMBL),   G5C662 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112522   ⟸   XM_021256863
- Peptide Label: isoform X1
- UniProtKB: A0AAX6SW26 (UniProtKB/TrEMBL),   G5C662 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112523   ⟸   XM_021256864
- Peptide Label: isoform X1
- UniProtKB: A0AAX6SW26 (UniProtKB/TrEMBL),   G5C662 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004843089   ⟸   XM_004843032
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JFE6 (UniProtKB/TrEMBL),   G5C662 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000015986   ⟸   ENSHGLT00000016154


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011430 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016154 ENTREZGENE
Gene3D-CATH 1.10.132.50 UniProtKB/TrEMBL
  1.20.1690.10 UniProtKB/TrEMBL
InterPro ATPase_su_c/d_sf UniProtKB/TrEMBL
  ATPase_V0-cplx_csu/dsu UniProtKB/TrEMBL
  ATPase_V0-cplx_dsu UniProtKB/TrEMBL
  V-type_ATPase_su_c/d_dom_3 UniProtKB/TrEMBL
  V-type_ATPase_suC/d UniProtKB/TrEMBL
KEGG Report hgl:101711869 UniProtKB/TrEMBL
NCBI Gene Atp6v0d1 ENTREZGENE
PANTHER PTHR11028 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT D 1 UniProtKB/TrEMBL
Pfam vATP-synt_AC39 UniProtKB/TrEMBL
PIRSF V-ATP_synth_D UniProtKB/TrEMBL
Superfamily-SCOP SSF103486 UniProtKB/TrEMBL
UniProt A0A0P6JFE6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SW26 ENTREZGENE, UniProtKB/TrEMBL
  G5C662 ENTREZGENE, UniProtKB/TrEMBL