Atp6v0d2 (ATPase H+ transporting V0 subunit d2) - Rat Genome Database

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Gene: Atp6v0d2 (ATPase H+ transporting V0 subunit d2) Heterocephalus glaber
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Symbol: Atp6v0d2
Name: ATPase H+ transporting V0 subunit d2
RGD ID: 18919151
Description: ENCODES a protein that exhibits proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN proton transmembrane transport (inferred); ASSOCIATED WITH ovarian cyst (ortholog); Stomach Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); early endosome (ortholog); endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase subunit d 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247445,617,711 - 5,664,006 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247445,618,144 - 5,663,794 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp6v0d2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247445,617,711 - 5,664,006 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247445,618,144 - 5,663,794 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATP6V0D2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38886,098,910 - 86,154,225 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl885,987,323 - 86,154,225 (+)EnsemblGRCh38hg38GRCh38
GRCh37887,111,139 - 87,166,454 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36887,180,255 - 87,235,570 (+)NCBINCBI36Build 36hg18NCBI36
Build 34887,180,254 - 87,235,570NCBI
Celera883,305,507 - 83,360,717 (+)NCBICelera
Cytogenetic Map8q21.3NCBI
HuRef882,320,757 - 82,376,003 (+)NCBIHuRef
CHM1_1887,152,442 - 87,207,669 (+)NCBICHM1_1
T2T-CHM13v2.0887,216,307 - 87,271,615 (+)NCBIT2T-CHM13v2.0
Atp6v0d2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39419,876,838 - 19,922,566 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl419,876,841 - 19,922,605 (-)EnsemblGRCm39 Ensembl
GRCm38419,876,838 - 19,922,566 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl419,876,841 - 19,922,605 (-)EnsemblGRCm38mm10GRCm38
MGSCv37419,803,985 - 19,849,713 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36419,803,988 - 19,849,713 (-)NCBIMGSCv36mm8
Celera419,634,311 - 19,678,717 (-)NCBICelera
Cytogenetic Map4A3NCBI
cM Map47.67NCBI
Atp6v0d2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8538,133,151 - 38,182,245 (-)NCBIGRCr8
mRatBN7.2533,336,257 - 33,385,354 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl533,336,264 - 33,385,354 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx535,456,598 - 35,505,752 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0537,048,803 - 37,097,953 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0536,988,308 - 37,037,462 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0533,843,591 - 33,892,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl533,843,519 - 33,892,462 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0538,499,081 - 38,547,691 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4534,476,045 - 34,524,995 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1534,476,226 - 34,525,174 (-)NCBI
Celera532,423,635 - 32,472,662 (-)NCBICelera
Cytogenetic Map5q13NCBI
Atp6v0d2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554173,778,462 - 3,836,672 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554173,778,587 - 3,832,973 (+)NCBIChiLan1.0ChiLan1.0
ATP6V0D2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27103,507,650 - 103,563,060 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1879,045,991 - 79,101,384 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0882,800,353 - 82,855,741 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1884,771,532 - 84,826,406 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl884,771,427 - 84,826,406 (+)Ensemblpanpan1.1panPan2
ATP6V0D2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12932,336,304 - 32,378,818 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2932,336,467 - 32,378,527 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2932,557,003 - 32,599,242 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02932,491,620 - 32,533,856 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2932,491,605 - 32,533,570 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12932,535,987 - 32,578,019 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02932,560,242 - 32,602,461 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02932,980,580 - 33,022,805 (+)NCBIUU_Cfam_GSD_1.0
Atp6v0d2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530346,973,049 - 47,018,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936544774,125 - 819,244 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936544774,154 - 819,189 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0D2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl450,694,189 - 50,749,378 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1450,694,188 - 50,749,373 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2455,660,240 - 55,715,444 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V0D2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1881,280,642 - 81,336,945 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl881,280,888 - 81,337,106 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603959,615,834 - 59,691,705 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000019797   ⟹   ENSHGLP00000019601
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247445,617,711 - 5,664,006 (-)Ensembl
RefSeq Acc Id: XM_004841977   ⟹   XP_004842034
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247445,618,144 - 5,663,794 (-)NCBI
RefSeq Acc Id: XM_021255972   ⟹   XP_021111631
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247445,618,144 - 5,650,515 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004842034 (Get FASTA)   NCBI Sequence Viewer  
  XP_021111631 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB00476 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019601
  ENSHGLP00100022593
GenBank Protein JAO03345 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004842034   ⟸   XM_004841977
- Peptide Label: isoform X1
- UniProtKB: G5ATW5 (UniProtKB/TrEMBL),   A0A0P6JFP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111631   ⟸   XM_021255972
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JFP2 (UniProtKB/TrEMBL),   A0AAX6SPR6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000019601   ⟸   ENSHGLT00000019797


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014042 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100016615 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000019797 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100022828 UniProtKB/TrEMBL
Gene3D-CATH 1.10.132.50 UniProtKB/TrEMBL
  1.20.1690.10 UniProtKB/TrEMBL
InterPro ATPase_su_c/d_sf UniProtKB/TrEMBL
  ATPase_V0-cplx_csu/dsu UniProtKB/TrEMBL
  ATPase_V0-cplx_dsu UniProtKB/TrEMBL
  V-type_ATPase_su_c/d_dom_3 UniProtKB/TrEMBL
  V-type_ATPase_suC/d UniProtKB/TrEMBL
KEGG Report hgl:101696829 UniProtKB/TrEMBL
NCBI Gene Atp6v0d2 ENTREZGENE
PANTHER PTHR11028 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT D 2 UniProtKB/TrEMBL
Pfam vATP-synt_AC39 UniProtKB/TrEMBL
PIRSF V-ATP_synth_D UniProtKB/TrEMBL
Superfamily-SCOP SSF103486 UniProtKB/TrEMBL
UniProt A0A0P6JFP2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SPR6 ENTREZGENE, UniProtKB/TrEMBL
  G5ATW5 ENTREZGENE, UniProtKB/TrEMBL