Cdhr2 (cadherin related family member 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cdhr2 (cadherin related family member 2) Heterocephalus glaber
Analyze
Symbol: Cdhr2
Name: cadherin related family member 2
RGD ID: 18915984
Description: ENCODES a protein that exhibits calcium ion binding (inferred); cell adhesion molecule binding (inferred); INVOLVED IN brush border assembly (ortholog); cell-cell adhesion mediated by cadherin (ortholog); epithelial cell differentiation (ortholog); ASSOCIATED WITH Chromosome 5, Trisomy 5q (ortholog); Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); brush border membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cadherin-related family member 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473313,535,809 - 13,576,940 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473313,537,363 - 13,582,390 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cdhr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473313,535,809 - 13,576,940 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473313,537,363 - 13,582,390 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CDHR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385176,542,511 - 176,595,974 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5176,542,511 - 176,595,974 (+)EnsemblGRCh38hg38GRCh38
GRCh375175,969,512 - 176,022,975 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365175,908,971 - 175,955,375 (+)NCBINCBI36Build 36hg18NCBI36
Celera5172,478,089 - 172,531,637 (-)NCBICelera
Cytogenetic Map5q35.2NCBI
HuRef5170,893,401 - 170,947,042 (+)NCBIHuRef
CHM1_15175,402,210 - 175,455,196 (+)NCBICHM1_1
T2T-CHM13v2.05177,087,074 - 177,142,566 (+)NCBIT2T-CHM13v2.0
Cdhr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391354,849,276 - 54,884,475 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1354,849,274 - 54,884,475 (+)EnsemblGRCm39 Ensembl
GRCm381354,701,463 - 54,736,662 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1354,701,461 - 54,736,662 (+)EnsemblGRCm38mm10GRCm38
MGSCv371354,802,824 - 54,838,023 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361354,711,085 - 54,746,277 (+)NCBIMGSCv36mm8
Celera1355,767,386 - 55,802,298 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1329.03NCBI
Cdhr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,881,979 - 9,917,698 (-)NCBIGRCr8
mRatBN7.2179,876,853 - 9,913,356 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,876,860 - 9,912,575 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01710,415,044 - 10,450,589 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1710,415,123 - 10,439,691 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01712,540,996 - 12,576,334 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41715,937,987 - 15,962,796 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera179,951,957 - 9,976,839 (-)NCBICelera
Cytogenetic Map17p14NCBI
Cdhr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540828,832,325 - 28,875,534 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540828,832,362 - 28,871,345 (+)NCBIChiLan1.0ChiLan1.0
CDHR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24171,630,262 - 171,676,130 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15169,769,801 - 169,815,669 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05171,846,538 - 171,893,797 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15178,916,707 - 178,963,944 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5178,916,707 - 178,964,893 (+)Ensemblpanpan1.1panPan2
CDHR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1436,740,964 - 36,777,118 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl436,740,966 - 36,777,803 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha436,707,763 - 36,743,827 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0437,107,067 - 37,143,175 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl437,107,075 - 37,143,174 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1436,932,892 - 36,968,996 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0437,120,701 - 37,156,839 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0437,628,842 - 37,664,949 (-)NCBIUU_Cfam_GSD_1.0
Cdhr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213121,785,575 - 121,831,018 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936597831,855 - 857,013 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936597831,895 - 855,925 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDHR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl281,318,407 - 81,361,606 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1281,319,179 - 81,361,598 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2282,920,844 - 82,963,238 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDHR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12378,571,170 - 78,602,699 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2378,571,792 - 78,602,552 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660759,688,711 - 9,736,431 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000021436   ⟹   ENSHGLP00000021232
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473313,535,809 - 13,576,940 (-)Ensembl
RefSeq Acc Id: XM_013078250   ⟹   XP_012933704
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473313,537,363 - 13,582,390 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012933704 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000021232
GenBank Protein JAN98272 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_012933704   ⟸   XM_013078250
- UniProtKB: A0A0P6JCM1 (UniProtKB/TrEMBL),   A0AAX6R4M1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000021232   ⟸   ENSHGLT00000021436


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015170 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000021436 ENTREZGENE
Gene3D-CATH Cadherins UniProtKB/TrEMBL
InterPro Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
NCBI Gene Cdhr2 ENTREZGENE
PANTHER CADHERIN-RELATED FAMILY MEMBER 2 UniProtKB/TrEMBL
  FAT ATYPICAL CADHERIN-RELATED UniProtKB/TrEMBL
  PROTOCADHERIN FAT 4 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A0P6JCM1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6R4M1 ENTREZGENE, UniProtKB/TrEMBL