Atp6v0e1 (ATPase H+ transporting V0 subunit e1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Atp6v0e1 (ATPase H+ transporting V0 subunit e1) Heterocephalus glaber
Analyze
Symbol: Atp6v0e1
Name: ATPase H+ transporting V0 subunit e1
RGD ID: 18915540
Description: ENCODES a protein that exhibits proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN response to amino acid (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); atrial heart septal defect 7 (ortholog); Atrial Septal Defect with Atrioventricular Conduction Defects (ortholog); FOUND IN proton-transporting V-type ATPase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase subunit e 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473317,032,011 - 17,070,152 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473317,032,792 - 17,069,319 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp6v0e1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473317,032,011 - 17,070,152 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473317,032,792 - 17,069,319 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATP6V0E1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385172,983,771 - 173,035,445 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5172,983,771 - 173,035,445 (+)EnsemblGRCh38hg38GRCh38
GRCh375172,410,774 - 172,462,448 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365172,343,369 - 172,394,506 (+)NCBINCBI36Build 36hg18NCBI36
Build 345172,343,368 - 172,394,506NCBI
Celera5168,443,924 - 168,495,366 (+)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5167,505,479 - 167,556,521 (+)NCBIHuRef
CHM1_15171,843,454 - 171,894,641 (+)NCBICHM1_1
T2T-CHM13v2.05173,523,874 - 173,575,550 (+)NCBIT2T-CHM13v2.0
Atp6v0e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,895,370 - 26,918,621 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,882,205 - 26,918,621 (+)EnsemblGRCm39 Ensembl
GRCm381726,676,396 - 26,699,647 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1726,663,231 - 26,699,647 (+)EnsemblGRCm38mm10GRCm38
MGSCv371726,813,341 - 26,836,592 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361726,403,996 - 26,427,237 (+)NCBIMGSCv36mm8
Celera1727,212,703 - 27,236,263 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.46NCBI
Atp6v0e1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81016,984,084 - 17,007,156 (-)NCBIGRCr8
mRatBN7.21016,479,656 - 16,502,732 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1016,479,567 - 16,524,434 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1021,229,547 - 21,252,658 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01020,718,119 - 20,741,226 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01016,207,894 - 16,230,961 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01016,769,857 - 16,792,930 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1016,769,666 - 16,792,909 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01016,661,968 - 16,685,040 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41016,741,507 - 16,764,579 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11016,742,555 - 16,765,628 (-)NCBI
Celera1016,138,176 - 16,161,412 (-)NCBICelera
Cytogenetic Map10q12NCBI
Atp6v0e1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540825,667,703 - 25,703,550 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540825,667,703 - 25,703,550 (+)NCBIChiLan1.0ChiLan1.0
ATP6V0E1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24168,122,157 - 168,173,543 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15166,261,700 - 166,313,085 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05168,336,845 - 168,388,230 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15175,246,088 - 175,297,288 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5175,246,088 - 175,297,289 (+)Ensemblpanpan1.1panPan2
ATP6V0E1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1439,378,007 - 39,409,968 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl439,378,004 - 39,409,981 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha439,323,465 - 39,355,356 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0439,749,010 - 39,780,983 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl439,749,007 - 39,780,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1439,565,769 - 39,597,687 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0439,755,511 - 39,787,428 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0440,264,617 - 40,296,553 (-)NCBIUU_Cfam_GSD_1.0
Atp6v0e1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721393,787,496 - 93,811,256 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366092,510,182 - 2,533,925 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366092,510,178 - 2,533,934 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0E1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11651,225,719 - 51,260,712 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21655,538,813 - 55,574,011 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap16qNCBI
ATP6V0E1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12375,149,843 - 75,199,475 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2375,149,710 - 75,200,192 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660343,412,129 - 3,462,226 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000025814   ⟹   ENSHGLP00000025588
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473317,032,011 - 17,070,152 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000025815   ⟹   ENSHGLP00000025589
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473317,037,892 - 17,070,152 (-)Ensembl
RefSeq Acc Id: XM_004836372   ⟹   XP_004836429
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473317,032,792 - 17,069,319 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004836429 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB08395 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025588
GenBank Protein JAO03442 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004836429   ⟸   XM_004836372
- UniProtKB: G5BGI4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000025588   ⟸   ENSHGLT00000025814
Ensembl Acc Id: ENSHGLP00000025589   ⟸   ENSHGLT00000025815


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018219 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000025814 ENTREZGENE
InterPro ATPase_V0-cplx_e1/e2_su UniProtKB/TrEMBL
  ATPase_V0-cplx_e1/e2_su_met UniProtKB/TrEMBL
KEGG Report hgl:101726308 UniProtKB/TrEMBL
NCBI Gene Atp6v0e1 ENTREZGENE
PANTHER PTHR12263 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT E 1 UniProtKB/TrEMBL
Pfam ATP_synt_H UniProtKB/TrEMBL
PIRSF V-ATP_synth_e1/e2 UniProtKB/TrEMBL
UniProt G5BGI4 ENTREZGENE, UniProtKB/TrEMBL