Atp6v0a4 (ATPase H+ transporting V0 subunit a4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Atp6v0a4 (ATPase H+ transporting V0 subunit a4) Heterocephalus glaber
Analyze
Symbol: Atp6v0a4
Name: ATPase H+ transporting V0 subunit a4
RGD ID: 18914654
Description: ENCODES a protein that exhibits ATPase binding (inferred); proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN ossification (ortholog); proton transmembrane transport (ortholog); regulation of pH (ortholog); ASSOCIATED WITH Distal Renal Tubular Acidosis (ortholog); Distal Renal Tubular Acidosis 3, Autosomal Recessive (ortholog); genetic disease (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); brush border (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase 116 kDa subunit a
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476519,149,589 - 19,194,158 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476519,149,353 - 19,219,242 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp6v0a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476519,149,589 - 19,194,158 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476519,149,353 - 19,219,242 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATP6V0A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387138,706,294 - 138,798,196 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7138,706,294 - 138,799,560 (-)EnsemblGRCh38hg38GRCh38
GRCh377138,391,039 - 138,482,941 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367138,041,579 - 138,133,481 (-)NCBINCBI36Build 36hg18NCBI36
Build 347137,848,294 - 137,916,037NCBI
Celera7133,128,799 - 133,220,749 (-)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7132,702,109 - 132,793,853 (-)NCBIHuRef
CHM1_17138,324,308 - 138,416,716 (-)NCBICHM1_1
T2T-CHM13v2.07140,018,750 - 140,111,076 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27137,735,216 - 137,827,150 (-)NCBI
Atp6v0a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39638,025,418 - 38,101,521 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl638,025,418 - 38,101,521 (-)EnsemblGRCm39 Ensembl
GRCm38638,048,483 - 38,124,586 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl638,048,483 - 38,124,586 (-)EnsemblGRCm38mm10GRCm38
MGSCv37637,998,483 - 38,074,586 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36637,978,091 - 38,054,182 (-)NCBIMGSCv36mm8
Celera638,029,008 - 38,104,935 (-)NCBICelera
Cytogenetic Map6B1NCBI
cM Map617.5NCBI
Atp6v0a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8467,727,145 - 67,809,092 (-)NCBIGRCr8
mRatBN7.2466,760,163 - 66,842,126 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl466,760,159 - 66,842,110 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx471,701,190 - 71,783,633 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0467,622,267 - 67,704,722 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0466,020,233 - 66,102,520 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0465,736,585 - 65,821,916 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl465,736,585 - 65,818,521 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0465,554,091 - 65,639,218 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4465,588,970 - 65,671,150 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1465,865,107 - 65,930,467 (-)NCBI
Celera461,781,600 - 61,863,525 (-)NCBICelera
Cytogenetic Map4q23NCBI
Atp6v0a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554944,199,803 - 4,251,569 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554944,174,542 - 4,251,450 (+)NCBIChiLan1.0ChiLan1.0
ATP6V0A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26175,521,062 - 175,586,363 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1727,531,314 - 27,596,491 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07130,665,997 - 130,758,537 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17143,154,382 - 143,210,822 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7143,154,712 - 143,218,802 (-)Ensemblpanpan1.1panPan2
ATP6V0A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1169,864,938 - 9,949,740 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl169,885,149 - 9,949,708 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1610,706,132 - 10,790,666 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0169,784,775 - 9,869,897 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl169,804,731 - 9,869,865 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1169,733,524 - 9,818,044 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0169,576,588 - 9,661,385 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0169,650,052 - 9,734,848 (+)NCBIUU_Cfam_GSD_1.0
Atp6v0a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511816,113,322 - 16,180,145 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365923,039,705 - 3,086,844 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365923,039,911 - 3,083,610 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1810,919,422 - 10,966,410 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11810,868,208 - 10,966,801 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21811,330,847 - 11,430,526 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V0A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121107,407,831 - 107,505,300 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660724,258,221 - 4,314,820 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000008581   ⟹   ENSHGLP00000008491
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476519,149,589 - 19,194,158 (-)Ensembl
RefSeq Acc Id: XM_004851248   ⟹   XP_004851305
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476519,149,353 - 19,196,452 (-)NCBI
RefSeq Acc Id: XM_004851249   ⟹   XP_004851306
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476519,149,353 - 19,219,242 (-)NCBI
RefSeq Acc Id: XM_004851250   ⟹   XP_004851307
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476519,149,353 - 19,194,175 (-)NCBI
RefSeq Acc Id: XM_021263668   ⟹   XP_021119327
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476519,149,353 - 19,196,452 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004851305 (Get FASTA)   NCBI Sequence Viewer  
  XP_004851306 (Get FASTA)   NCBI Sequence Viewer  
  XP_004851307 (Get FASTA)   NCBI Sequence Viewer  
  XP_021119327 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB04410 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008491
  ENSHGLP00000041723
  ENSHGLP00100015716
GenBank Protein JAO01791 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004851306   ⟸   XM_004851249
- Peptide Label: isoform X1
- UniProtKB: G5B549 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021119327   ⟸   XM_021263668
- Peptide Label: isoform X2
- UniProtKB: A0AAX6TAK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004851305   ⟸   XM_004851248
- Peptide Label: isoform X1
- UniProtKB: G5B549 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004851307   ⟸   XM_004851250
- Peptide Label: isoform X3
- UniProtKB: A0AAX6PGF3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000008491   ⟸   ENSHGLT00000008581


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006131 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100011604 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000008581 ENTREZGENE
  ENSHGLT00000057979 UniProtKB/TrEMBL
  ENSHGLT00100015887 UniProtKB/TrEMBL
InterPro V-ATPase_116kDa_su UniProtKB/TrEMBL
  V-type_ATPase_116kDa_su_euka UniProtKB/TrEMBL
KEGG Report hgl:101719254 UniProtKB/TrEMBL
NCBI Gene Atp6v0a4 ENTREZGENE
PANTHER PTHR11629 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE 116 KDA SUBUNIT A ISOFORM 4 UniProtKB/TrEMBL
Pfam V_ATPase_I UniProtKB/TrEMBL
PIRSF ATP6V0A1 UniProtKB/TrEMBL
UniProt A0AAX6PGF3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6TAK2 ENTREZGENE, UniProtKB/TrEMBL
  G5B549 ENTREZGENE, UniProtKB/TrEMBL