Acbd5 (acyl-CoA binding domain containing 5) - Rat Genome Database

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Gene: Acbd5 (acyl-CoA binding domain containing 5) Heterocephalus glaber
Analyze
Symbol: Acbd5
Name: acyl-CoA binding domain containing 5
RGD ID: 18914235
Description: ENCODES a protein that exhibits fatty-acyl-CoA binding (inferred); lipid binding (inferred); INVOLVED IN autophagy (inferred); fatty acid metabolic process (inferred); pexophagy (inferred); ASSOCIATED WITH cone-rod dystrophy (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acyl-CoA-binding domain-containing protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247962,261,009 - 2,297,982 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Acbd5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247962,261,009 - 2,297,982 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ACBD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381027,182,838 - 27,242,111 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1027,168,135 - 27,243,046 (-)EnsemblGRCh38hg38GRCh38
GRCh371027,471,767 - 27,531,040 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361027,524,149 - 27,571,065 (-)NCBINCBI36Build 36hg18NCBI36
Build 341027,525,752 - 27,569,718NCBI
Celera1027,200,570 - 27,247,485 (-)NCBICelera
Cytogenetic Map10p12.1NCBI
HuRef1027,152,803 - 27,199,482 (-)NCBIHuRef
CHM1_11027,484,073 - 27,531,001 (-)NCBICHM1_1
T2T-CHM13v2.01027,212,829 - 27,273,060 (-)NCBIT2T-CHM13v2.0
Acbd5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39222,958,189 - 23,004,525 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl222,958,179 - 23,005,570 (+)EnsemblGRCm39 Ensembl
GRCm38223,068,166 - 23,114,513 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl223,068,167 - 23,115,558 (+)EnsemblGRCm38mm10GRCm38
MGSCv37222,923,721 - 22,970,033 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36222,891,458 - 22,936,519 (+)NCBIMGSCv36mm8
Celera222,799,879 - 22,846,172 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map215.21NCBI
Acbd5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81790,114,250 - 90,156,286 (+)NCBIGRCr8
mRatBN7.21785,206,178 - 85,248,909 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1785,206,303 - 85,248,215 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1788,690,500 - 88,732,433 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01792,525,889 - 92,567,809 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01786,542,673 - 86,584,588 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01789,882,465 - 89,923,982 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1789,883,615 - 89,923,423 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01791,547,980 - 91,589,933 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41796,677,365 - 96,716,091 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11796,686,182 - 96,728,835 (+)NCBI
Celera1783,649,881 - 83,688,324 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
Acbd5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554292,621,904 - 2,659,537 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554292,623,042 - 2,661,182 (-)NCBIChiLan1.0ChiLan1.0
ACBD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2839,824,767 - 39,871,691 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11039,830,094 - 39,877,018 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01027,292,094 - 27,351,332 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11027,654,359 - 27,712,710 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1027,666,395 - 27,711,423 (-)Ensemblpanpan1.1panPan2
ACBD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.126,873,207 - 6,923,152 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl26,874,831 - 6,922,082 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha25,626,332 - 5,676,376 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.025,062,819 - 5,112,916 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl25,062,761 - 5,111,947 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.124,440,160 - 4,490,195 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.024,516,672 - 4,569,045 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.024,683,337 - 4,734,042 (-)NCBIUU_Cfam_GSD_1.0
Acbd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934426,059,656 - 26,104,217 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364842,225,659 - 2,271,668 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364842,224,308 - 2,268,302 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACBD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1048,866,933 - 48,922,262 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11048,883,116 - 48,922,377 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21054,189,852 - 54,228,634 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACBD5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1926,795,072 - 26,844,013 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl926,794,822 - 26,842,134 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605132,804,512 - 32,852,650 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004859890   ⟹   XP_004859947
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247962,261,013 - 2,297,477 (-)NCBI
RefSeq Acc Id: XM_004859891   ⟹   XP_004859948
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247962,261,017 - 2,297,406 (-)NCBI
RefSeq Acc Id: XM_004859892   ⟹   XP_004859949
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247962,261,014 - 2,297,982 (-)NCBI
RefSeq Acc Id: XM_004859893   ⟹   XP_004859950
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247962,261,009 - 2,297,477 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004859947 (Get FASTA)   NCBI Sequence Viewer  
  XP_004859948 (Get FASTA)   NCBI Sequence Viewer  
  XP_004859949 (Get FASTA)   NCBI Sequence Viewer  
  XP_004859950 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004859950   ⟸   XM_004859893
- Peptide Label: isoform X3
- UniProtKB: A0AAX6PVL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004859947   ⟸   XM_004859890
- Peptide Label: isoform X1
- UniProtKB: A0AAX6PVK8 (UniProtKB/TrEMBL),   G5AUW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004859949   ⟸   XM_004859892
- Peptide Label: isoform X4
- UniProtKB: A0AAX6PU29 (UniProtKB/TrEMBL),   G5AUW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004859948   ⟸   XM_004859891
- Peptide Label: isoform X2
- UniProtKB: A0AAX6PW00 (UniProtKB/TrEMBL),   G5AUW4 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Gene3D-CATH 1.20.80.10 UniProtKB/TrEMBL
InterPro ACBD5 UniProtKB/TrEMBL
  Acyl-CoA-binding_prot_CS UniProtKB/TrEMBL
  Acyl-CoA-binding_protein UniProtKB/TrEMBL
  Acyl-CoA-binding_sf UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_sf UniProtKB/TrEMBL
NCBI Gene Acbd5 ENTREZGENE
PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 UniProtKB/TrEMBL
  ACYL-COA-BINDING PROTEIN, ACBP UniProtKB/TrEMBL
Pfam ACBP UniProtKB/TrEMBL
PIRSF MA_DBI UniProtKB/TrEMBL
PRINTS ACOABINDINGP UniProtKB/TrEMBL
PROSITE ACB_1 UniProtKB/TrEMBL
  ACB_2 UniProtKB/TrEMBL
Superfamily-SCOP Acyl-CoA binding protein UniProtKB/TrEMBL
UniProt A0AAX6PU29 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PVK8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PVL3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PW00 ENTREZGENE, UniProtKB/TrEMBL
  G5AUW4 ENTREZGENE, UniProtKB/TrEMBL