Mbd6 (methyl-CpG binding domain protein 6) - Rat Genome Database

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Gene: Mbd6 (methyl-CpG binding domain protein 6) Heterocephalus glaber
Analyze
Symbol: Mbd6
Name: methyl-CpG binding domain protein 6
RGD ID: 18913928
Description: ENCODES a protein that exhibits DNA binding (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); cataract 15 multiple types (ortholog); Charcot-Marie-Tooth disease axonal type 2U (ortholog); FOUND IN fibrillar center (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Methyl-CpG-binding domain protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480210,428,782 - 10,437,777 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480210,428,782 - 10,437,992 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mbd6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480210,428,782 - 10,437,777 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480210,428,782 - 10,437,992 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MBD6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,520,715 - 57,531,545 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1257,520,710 - 57,530,148 (+)EnsemblGRCh38hg38GRCh38
GRCh371257,916,607 - 57,923,931 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361256,202,926 - 56,210,198 (+)NCBINCBI36Build 36hg18NCBI36
Build 341256,202,925 - 56,210,198NCBI
Celera1257,572,491 - 57,579,763 (+)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1254,932,323 - 54,961,829 (+)NCBIHuRef
CHM1_11257,884,526 - 57,891,756 (+)NCBICHM1_1
T2T-CHM13v2.01257,488,889 - 57,498,388 (+)NCBIT2T-CHM13v2.0
Mbd6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,117,825 - 127,126,738 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,117,825 - 127,124,887 (-)EnsemblGRCm39 Ensembl
GRCm3810127,281,956 - 127,290,869 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,281,956 - 127,289,018 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710126,719,012 - 126,725,827 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610126,684,905 - 126,691,720 (-)NCBIMGSCv36mm8
Celera10129,674,397 - 129,680,132 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.5NCBI
Mbd6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8764,992,877 - 65,001,274 (-)NCBIGRCr8
mRatBN7.2763,107,562 - 63,115,841 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,107,562 - 63,113,274 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx764,996,836 - 65,002,548 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,199,256 - 67,204,968 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,000,607 - 67,006,319 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,571,435 - 70,580,146 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,571,435 - 70,577,147 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0770,745,585 - 70,752,317 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,239,304 - 67,245,037 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,260,033 - 67,265,767 (-)NCBI
Celera760,248,101 - 60,253,813 (-)NCBICelera
Cytogenetic Map7q22NCBI
Mbd6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554585,238,570 - 5,247,711 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554585,238,570 - 5,247,711 (+)NCBIChiLan1.0ChiLan1.0
MBD6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21036,810,961 - 36,818,440 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11236,807,732 - 36,817,469 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01231,396,733 - 31,404,126 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11231,655,461 - 31,664,638 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1231,655,461 - 31,664,638 (-)Ensemblpanpan1.1panPan2
MBD6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,611,462 - 1,620,546 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,613,643 - 1,619,745 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,674,704 - 1,683,709 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0101,620,536 - 1,629,548 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl101,621,929 - 1,629,548 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1101,598,546 - 1,607,549 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0101,840,434 - 1,849,437 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,965,429 - 1,974,435 (+)NCBIUU_Cfam_GSD_1.0
Mbd6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,191,723 - 57,200,920 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366461,669,281 - 1,678,512 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MBD6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl522,791,437 - 22,799,126 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1522,790,220 - 22,799,131 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,754,021 - 24,761,374 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MBD6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11153,431,423 - 53,438,719 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1153,432,903 - 53,437,817 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037192,524,292 - 192,532,894 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004861213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021241437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021241438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021241439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021241440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021241441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021241442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021241443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021241444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002388273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002388274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002388275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002388276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01071363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01003534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH169806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000024791   ⟹   ENSHGLP00000024569
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462480210,428,782 - 10,437,777 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000024792   ⟹   ENSHGLP00000024570
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462480210,428,782 - 10,436,183 (-)Ensembl
RefSeq Acc Id: XM_004861213   ⟹   XP_004861270
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480210,428,782 - 10,436,084 (-)NCBI
RefSeq Acc Id: XM_021241437   ⟹   XP_021097096
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480210,428,782 - 10,436,084 (-)NCBI
RefSeq Acc Id: XM_021241438   ⟹   XP_021097097
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480210,428,782 - 10,437,939 (-)NCBI
RefSeq Acc Id: XM_021241439   ⟹   XP_021097098
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480210,428,782 - 10,437,465 (-)NCBI
RefSeq Acc Id: XM_021241440   ⟹   XP_021097099
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480210,428,782 - 10,437,583 (-)NCBI
RefSeq Acc Id: XM_021241441   ⟹   XP_021097100
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480210,428,782 - 10,437,992 (-)NCBI
RefSeq Acc Id: XM_021241442   ⟹   XP_021097101
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480210,428,782 - 10,435,579 (-)NCBI
RefSeq Acc Id: XM_021241443   ⟹   XP_021097102
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480210,428,782 - 10,436,084 (-)NCBI
RefSeq Acc Id: XM_021241444   ⟹   XP_021097103
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480210,428,782 - 10,436,084 (-)NCBI
RefSeq Acc Id: XR_002388273
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480210,428,782 - 10,436,084 (-)NCBI
RefSeq Acc Id: XR_002388274
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480210,428,782 - 10,436,084 (-)NCBI
RefSeq Acc Id: XR_002388275
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480210,428,782 - 10,436,084 (-)NCBI
RefSeq Acc Id: XR_002388276
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480210,428,782 - 10,436,084 (-)NCBI
RefSeq Acc Id: XP_021097100   ⟸   XM_021241441
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RKV8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097097   ⟸   XM_021241438
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RKV8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097099   ⟸   XM_021241440
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RKV8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097098   ⟸   XM_021241439
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RKV8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004861270   ⟸   XM_004861213
- Peptide Label: isoform X4
- UniProtKB: G5BED1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097102   ⟸   XM_021241443
- Peptide Label: isoform X2
- UniProtKB: A0AAX6RMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097103   ⟸   XM_021241444
- Peptide Label: isoform X3
- UniProtKB: A0AAX6RL85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097096   ⟸   XM_021241437
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RKV8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097101   ⟸   XM_021241442
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RKV8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000024570   ⟸   ENSHGLT00000024792
Ensembl Acc Id: ENSHGLP00000024569   ⟸   ENSHGLT00000024791


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017515 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000024791 ENTREZGENE
  ENSHGLT00000024792 ENTREZGENE
InterPro DNA-bd_dom_sf UniProtKB/TrEMBL
  Methyl_CpG_DNA-bd UniProtKB/TrEMBL
NCBI Gene Mbd6 ENTREZGENE
PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 6 UniProtKB/TrEMBL
  PTHR16112 UniProtKB/TrEMBL
PROSITE MBD UniProtKB/TrEMBL
SMART MBD UniProtKB/TrEMBL
Superfamily-SCOP SSF54171 UniProtKB/TrEMBL
UniProt A0AAX6RKV8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RL85 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RMW9 ENTREZGENE, UniProtKB/TrEMBL
  G5BED1 ENTREZGENE, UniProtKB/TrEMBL