Amelx (amelogenin X-linked) - Rat Genome Database

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Gene: Amelx (amelogenin X-linked) Heterocephalus glaber
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Symbol: Amelx
Name: amelogenin X-linked
RGD ID: 18912630
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); growth factor activity (ortholog); hydroxyapatite binding (ortholog); INVOLVED IN amelogenesis (ortholog); cell adhesion (ortholog); odontogenesis of dentin-containing tooth (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); amelogenesis imperfecta type 1E (ortholog); amenorrhea (ortholog); FOUND IN basement membrane (ortholog); cell surface (ortholog); collagen-containing extracellular matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: amelogenin, X isoform
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248823,072,313 - 3,082,505 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248823,072,970 - 3,083,832 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Amelx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248823,072,313 - 3,082,505 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248823,072,970 - 3,083,832 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
AMELX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X11,293,413 - 11,309,588 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX11,293,413 - 11,300,761 (+)EnsemblGRCh38hg38GRCh38
GRCh37X11,311,533 - 11,318,881 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X11,221,454 - 11,228,802 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX15,438,990 - 15,446,338 (+)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX9,091,155 - 9,098,355 (+)NCBIHuRef
CHM1_1X11,342,001 - 11,349,349 (+)NCBICHM1_1
T2T-CHM13v2.0X10,875,912 - 10,892,087 (+)NCBIT2T-CHM13v2.0
Amelx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X167,959,110 - 167,970,205 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX167,959,110 - 167,970,196 (-)EnsemblGRCm39 Ensembl
GRCm38X169,176,114 - 169,187,209 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX169,176,114 - 169,187,200 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X165,614,046 - 165,625,141 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X164,524,127 - 164,531,314 (-)NCBIMGSCv36mm8
CeleraX152,339,918 - 152,351,218 (-)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX78.95NCBI
Amelx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X28,648,803 - 28,660,099 (+)NCBIGRCr8
mRatBN7.2X25,076,362 - 25,087,660 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX25,076,362 - 25,087,660 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX26,080,937 - 26,092,217 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X29,502,009 - 29,513,289 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X25,735,122 - 25,746,420 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X26,439,197 - 26,450,495 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX26,439,197 - 26,450,495 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X26,843,989 - 26,855,287 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X45,763,451 - 45,769,374 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X45,816,919 - 45,822,842 (+)NCBI
CeleraX25,496,279 - 25,507,557 (+)NCBICelera
Cytogenetic MapXq13NCBI
Amelx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555441,969,216 - 1,979,063 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555441,974,889 - 1,979,063 (-)NCBIChiLan1.0ChiLan1.0
AMELY
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2Y43,791,359 - 44,000,131 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1Y2,926,868 - 3,135,641 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X3,898,819 - 3,930,686 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X11,214,103 - 11,221,443 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX11,214,103 - 11,221,443 (+)Ensemblpanpan1.1panPan2
AMELX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X7,822,513 - 7,828,692 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX7,822,859 - 7,830,351 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX7,779,650 - 7,787,144 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X7,776,327 - 7,783,824 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX7,776,321 - 7,783,816 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X7,759,322 - 7,766,816 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X7,795,375 - 7,802,872 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X7,790,231 - 7,797,728 (+)NCBIUU_Cfam_GSD_1.0
Amelx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X1,168,483 - 1,174,166 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364701,169,906 - 1,179,604 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364701,169,906 - 1,174,166 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AMELX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX8,055,782 - 8,063,449 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X8,055,246 - 8,063,457 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X8,669,948 - 8,677,620 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AMELX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X9,927,740 - 9,934,104 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX9,741,594 - 9,745,776 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 EnsemblX9,741,594 - 9,745,776 (+)NCBIChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605611,535,786 - 11,539,980 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000013183   ⟹   ENSHGLP00000013046
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248823,072,313 - 3,082,505 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000013184   ⟹   ENSHGLP00000013047
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248823,076,552 - 3,082,505 (-)Ensembl
RefSeq Acc Id: XM_021249117   ⟹   XP_021104776
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248823,072,970 - 3,083,832 (-)NCBI
RefSeq Acc Id: XM_021249118   ⟹   XP_021104777
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248823,076,490 - 3,083,832 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021104776 (Get FASTA)   NCBI Sequence Viewer  
  XP_021104777 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000013047
RefSeq Acc Id: XP_021104776   ⟸   XM_021249117
- Peptide Label: isoform X1
- UniProtKB: A0AAX6S6C9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104777   ⟸   XM_021249118
- Peptide Label: isoform X2
- UniProtKB: A0AAX6S727 (UniProtKB/TrEMBL),   G5C947 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000013047   ⟸   ENSHGLT00000013184
Ensembl Acc Id: ENSHGLP00000013046   ⟸   ENSHGLT00000013183


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009327 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000013184 ENTREZGENE
InterPro Amelogenin UniProtKB/TrEMBL
NCBI Gene Amelx ENTREZGENE
PANTHER AMELOGENIN, Y ISOFORM UniProtKB/TrEMBL
  AMELOGENIN, Y ISOFORM UniProtKB/TrEMBL
Pfam Amelogenin UniProtKB/TrEMBL
PRINTS AMELOGENIN UniProtKB/TrEMBL
SMART Amelogenin UniProtKB/TrEMBL
UniProt A0AAX6S6C9 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S727 ENTREZGENE, UniProtKB/TrEMBL
  G5C947 ENTREZGENE, UniProtKB/TrEMBL