Dhcr7 (7-dehydrocholesterol reductase) - Rat Genome Database

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Gene: Dhcr7 (7-dehydrocholesterol reductase) Heterocephalus glaber
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Symbol: Dhcr7
Name: 7-dehydrocholesterol reductase
RGD ID: 18911374
Description: ENCODES a protein that exhibits 7-dehydrocholesterol reductase activity (ortholog); cholesterol-5,6-oxide hydrolase activity (ortholog); INVOLVED IN blood vessel development (ortholog); cholesterol biosynthetic process (ortholog); cholesterol biosynthetic process via lathosterol (ortholog); PARTICIPATES IN cholesterol biosynthetic pathway; ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); acute promyelocytic leukemia (ortholog); Animal Disease Models (ortholog); FOUND IN nuclear outer membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476716,118,052 - 16,132,834 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476716,118,157 - 16,132,225 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Dhcr7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476716,118,052 - 16,132,834 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476716,118,157 - 16,132,225 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
DHCR7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381171,427,287 - 71,449,043 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1171,428,193 - 71,452,868 (-)EnsemblGRCh38hg38GRCh38
GRCh371171,138,333 - 71,160,089 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361170,823,105 - 70,837,125 (-)NCBINCBI36Build 36hg18NCBI36
Build 341170,823,110 - 70,837,047NCBI
Celera1168,438,984 - 68,453,003 (-)NCBICelera
Cytogenetic Map11q13.4NCBI
HuRef1167,439,049 - 67,453,070 (-)NCBIHuRef
CHM1_11171,029,428 - 71,043,448 (-)NCBICHM1_1
T2T-CHM13v2.01171,354,234 - 71,375,999 (-)NCBIT2T-CHM13v2.0
Dhcr7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397143,376,827 - 143,402,147 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7143,376,882 - 143,402,147 (+)EnsemblGRCm39 Ensembl
GRCm387143,823,167 - 143,848,410 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7143,823,145 - 143,848,410 (+)EnsemblGRCm38mm10GRCm38
MGSCv377151,009,072 - 151,034,315 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367143,632,557 - 143,657,800 (+)NCBIMGSCv36mm8
Celera7143,579,742 - 143,604,212 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.33NCBI
Dhcr7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81208,444,434 - 208,460,408 (+)NCBIGRCr8
mRatBN7.21199,015,081 - 199,031,055 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1199,015,081 - 199,031,055 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1207,394,648 - 207,410,602 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01214,476,501 - 214,492,466 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01207,150,670 - 207,166,635 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01217,018,916 - 217,034,890 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1217,018,916 - 217,034,904 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01223,874,935 - 223,890,913 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41204,245,562 - 204,258,913 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11204,399,014 - 204,412,366 (+)NCBI
Celera1196,577,886 - 196,593,821 (+)NCBICelera
Cytogenetic Map1q42NCBI
Dhcr7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542215,119,173 - 15,136,771 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542215,119,155 - 15,136,771 (+)NCBIChiLan1.0ChiLan1.0
DHCR7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2972,320,577 - 72,334,547 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11173,363,320 - 73,376,738 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01166,450,230 - 66,464,214 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11169,721,741 - 69,735,715 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1169,721,741 - 69,735,715 (-)Ensemblpanpan1.1panPan2
DHCR7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11847,257,750 - 47,277,436 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1847,261,730 - 47,274,236 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1845,862,457 - 45,882,527 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01847,935,184 - 47,955,313 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1847,938,180 - 47,955,305 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11847,376,200 - 47,396,229 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01846,962,021 - 46,982,089 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01847,708,851 - 47,728,938 (+)NCBIUU_Cfam_GSD_1.0
LOC101971285
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049473,490,627 - 3,493,336 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367941,432,379 - 1,468,966 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DHCR7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl22,377,416 - 2,391,447 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.122,377,352 - 2,391,846 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22851,404 - 864,968 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DHCR7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.113,243,263 - 3,257,332 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl13,243,313 - 3,257,487 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038100,430,412 - 100,444,448 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000017418   ⟹   ENSHGLP00000017245
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476716,118,052 - 16,132,834 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000017419   ⟹   ENSHGLP00000017246
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476716,119,386 - 16,132,834 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000017420   ⟹   ENSHGLP00000017247
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476716,122,348 - 16,128,305 (+)Ensembl
RefSeq Acc Id: XM_004852136   ⟹   XP_004852193
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476716,118,157 - 16,132,225 (+)NCBI
RefSeq Acc Id: XM_004852138   ⟹   XP_004852195
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476716,118,344 - 16,131,320 (+)NCBI
RefSeq Acc Id: XM_004852139   ⟹   XP_004852196
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476716,118,157 - 16,131,320 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004852193 (Get FASTA)   NCBI Sequence Viewer  
  XP_004852195 (Get FASTA)   NCBI Sequence Viewer  
  XP_004852196 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB12341 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000017246
GenBank Protein JAO02232 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004852193   ⟸   XM_004852136
- Peptide Label: isoform X1
- UniProtKB: A0AAX6PIL1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004852196   ⟸   XM_004852139
- Peptide Label: isoform X2
- UniProtKB: G5BST0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004852195   ⟸   XM_004852138
- Peptide Label: isoform X1
- UniProtKB: A0AAX6PIL1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000017246   ⟸   ENSHGLT00000017419
Ensembl Acc Id: ENSHGLP00000017247   ⟸   ENSHGLT00000017420
Ensembl Acc Id: ENSHGLP00000017245   ⟸   ENSHGLT00000017418


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012353 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000017419 ENTREZGENE
Gene3D-CATH 1.20.120.1630 UniProtKB/TrEMBL
InterPro Ergosterol_biosynth_ERG4_ERG24 UniProtKB/TrEMBL
  Sterol_reductase_CS UniProtKB/TrEMBL
NCBI Gene Dhcr7 ENTREZGENE
PANTHER 7-DEHYDROCHOLESTEROL REDUCTASE UniProtKB/TrEMBL
  DELTA(14)-STEROL REDUCTASE UniProtKB/TrEMBL
Pfam ERG4_ERG24 UniProtKB/TrEMBL
PROSITE STEROL_REDUCT_1 UniProtKB/TrEMBL
  STEROL_REDUCT_2 UniProtKB/TrEMBL
UniProt A0AAX6PIL1 ENTREZGENE, UniProtKB/TrEMBL
  G5BST0 ENTREZGENE, UniProtKB/TrEMBL