Tnpo3 (transportin 3) - Rat Genome Database

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Gene: Tnpo3 (transportin 3) Heterocephalus glaber
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Symbol: Tnpo3
Name: transportin 3
RGD ID: 18910287
Description: ENCODES a protein that exhibits identical protein binding (ortholog); small GTPase binding (ortholog); INVOLVED IN protein import into nucleus (inferred); ASSOCIATED WITH autosomal dominant limb-girdle muscular dystrophy (ortholog); autosomal dominant limb-girdle muscular dystrophy type 2 (ortholog); genetic disease (ortholog); FOUND IN annulate lamellae (ortholog); cytosol (ortholog); nuclear envelope (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transportin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247837,168,867 - 7,261,261 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247837,168,865 - 7,261,008 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tnpo3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247837,168,867 - 7,261,261 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247837,168,865 - 7,261,008 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TNPO3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387128,954,185 - 129,056,193 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7128,954,180 - 129,055,173 (-)EnsemblGRCh38hg38GRCh38
GRCh377128,594,239 - 128,695,165 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367128,382,184 - 128,482,434 (-)NCBINCBI36Build 36hg18NCBI36
Build 347128,188,898 - 128,289,149NCBI
Celera7123,390,730 - 123,491,720 (-)NCBICelera
Cytogenetic Map7q32.1NCBI
HuRef7122,955,420 - 123,056,377 (-)NCBIHuRef
CHM1_17128,527,540 - 128,628,528 (-)NCBICHM1_1
T2T-CHM13v2.07130,267,070 - 130,368,954 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27127,977,977 - 128,078,965 (-)NCBI
Tnpo3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39629,540,826 - 29,609,918 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl629,540,826 - 29,609,886 (-)EnsemblGRCm39 Ensembl
GRCm38629,540,827 - 29,609,858 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl629,540,827 - 29,609,887 (-)EnsemblGRCm38mm10GRCm38
MGSCv37629,490,827 - 29,559,607 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36629,490,837 - 29,559,617 (-)NCBIMGSCv36mm8
Celera629,549,675 - 29,618,438 (-)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.36NCBI
Tnpo3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8459,108,278 - 59,197,012 (-)NCBIGRCr8
mRatBN7.2458,142,954 - 58,220,365 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl458,143,001 - 58,220,433 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx463,126,422 - 63,203,551 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0459,042,589 - 59,119,719 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0457,444,471 - 57,521,602 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0456,820,023 - 56,897,310 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl456,820,023 - 56,897,338 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0456,587,184 - 56,664,471 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,422,446 - 56,499,733 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1456,682,348 - 56,760,325 (-)NCBI
Celera453,250,776 - 53,328,057 (-)NCBICelera
Cytogenetic Map4q22NCBI
Tnpo3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554799,740,805 - 9,831,339 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554799,739,927 - 9,831,276 (-)NCBIChiLan1.0ChiLan1.0
TNPO3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26165,758,971 - 165,863,548 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1717,769,217 - 17,871,151 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07120,906,238 - 121,008,216 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17133,430,495 - 133,531,771 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7133,430,490 - 133,531,774 (-)Ensemblpanpan1.1panPan2
TNPO3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,639,276 - 7,722,453 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl147,639,558 - 7,722,351 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha147,326,495 - 7,409,297 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0147,405,066 - 7,488,297 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl147,405,082 - 7,489,141 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1147,610,134 - 7,693,338 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0147,352,085 - 7,435,363 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0147,497,117 - 7,580,541 (+)NCBIUU_Cfam_GSD_1.0
Tnpo3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511825,915,334 - 26,001,614 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365796,047,351 - 6,134,583 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365796,047,900 - 6,134,211 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNPO3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1819,572,776 - 19,673,163 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11819,572,555 - 19,673,165 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21820,641,615 - 20,742,751 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TNPO3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12197,554,484 - 97,654,289 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2197,553,519 - 97,653,889 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660425,747,926 - 5,847,780 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000006183   ⟹   ENSHGLP00000006108
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247837,168,867 - 7,261,261 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000006184   ⟹   ENSHGLP00000006109
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247837,169,239 - 7,261,261 (+)Ensembl
RefSeq Acc Id: XM_004856367   ⟹   XP_004856424
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247837,168,865 - 7,261,008 (+)NCBI
RefSeq Acc Id: XM_004856368   ⟹   XP_004856425
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247837,168,866 - 7,261,008 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004856424 (Get FASTA)   NCBI Sequence Viewer  
  XP_004856425 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006109
RefSeq Acc Id: XP_004856424   ⟸   XM_004856367
- Peptide Label: isoform X1
- UniProtKB: G5BH91 (UniProtKB/TrEMBL),   A0AAX6PQL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856425   ⟸   XM_004856368
- Peptide Label: isoform X2
- UniProtKB: G5BH91 (UniProtKB/TrEMBL),   A0AAX6PQR1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000006108   ⟸   ENSHGLT00000006183
Ensembl Acc Id: ENSHGLP00000006109   ⟸   ENSHGLT00000006184


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004463 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000006184 ENTREZGENE
Gene3D-CATH Leucine-rich Repeat Variant UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Exportin-1/Importin-b-like UniProtKB/TrEMBL
  Importin_beta-like_NTR UniProtKB/TrEMBL
NCBI Gene Tnpo3 ENTREZGENE
PANTHER TRANSPORTIN 3 AND IMPORTIN 13 UniProtKB/TrEMBL
  TRANSPORTIN-3 UniProtKB/TrEMBL
Pfam Xpo1 UniProtKB/TrEMBL
Superfamily-SCOP ARM repeat UniProtKB/TrEMBL
UniProt A0AAX6PQL2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PQR1 ENTREZGENE, UniProtKB/TrEMBL
  G5BH91 ENTREZGENE, UniProtKB/TrEMBL