Atp6v1d (ATPase H+ transporting V1 subunit D) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Atp6v1d (ATPase H+ transporting V1 subunit D) Heterocephalus glaber
Analyze
Symbol: Atp6v1d
Name: ATPase H+ transporting V1 subunit D
RGD ID: 18909831
Description: ENCODES a protein that exhibits proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN cilium assembly (inferred); monoatomic ion transport (inferred); protein localization to cilium (inferred); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Experimental Liver Cirrhosis (ortholog); Leber congenital amaurosis 13 (ortholog); FOUND IN extrinsic component of synaptic vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase subunit D
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473433,640,839 - 33,657,745 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473433,640,842 - 33,669,471 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp6v1d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473433,640,839 - 33,657,745 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473433,640,842 - 33,669,471 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATP6V1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381467,337,872 - 67,359,804 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1467,294,371 - 67,360,265 (-)EnsemblGRCh38hg38GRCh38
GRCh371467,804,589 - 67,826,521 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361466,874,342 - 66,896,344 (-)NCBINCBI36Build 36hg18NCBI36
Build 341466,874,342 - 66,896,344NCBI
Celera1447,863,642 - 47,885,645 (-)NCBICelera
Cytogenetic Map14q23.3NCBI
HuRef1447,974,504 - 47,996,644 (-)NCBIHuRef
CHM1_11467,743,271 - 67,765,404 (-)NCBICHM1_1
T2T-CHM13v2.01461,544,996 - 61,566,929 (-)NCBIT2T-CHM13v2.0
Atp6v1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391278,889,756 - 78,908,810 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1278,887,499 - 78,908,412 (-)EnsemblGRCm39 Ensembl
GRCm381278,842,982 - 78,862,008 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1278,840,725 - 78,861,638 (-)EnsemblGRCm38mm10GRCm38
MGSCv371279,943,969 - 79,962,625 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361279,761,822 - 79,780,478 (-)NCBIMGSCv36mm8
Celera1280,307,557 - 80,326,098 (-)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1235.51NCBI
Atp6v1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86103,389,778 - 103,405,346 (-)NCBIGRCr8
mRatBN7.2697,656,725 - 97,672,295 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl697,656,576 - 97,672,303 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx698,086,262 - 98,101,815 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0698,385,424 - 98,400,977 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0697,772,371 - 97,787,931 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06102,032,271 - 102,047,754 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6102,032,276 - 102,047,758 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06111,407,085 - 111,421,779 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46101,479,417 - 101,494,826 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16101,482,872 - 101,498,282 (-)NCBI
Celera696,044,738 - 96,060,175 (-)NCBICelera
Cytogenetic Map6q24NCBI
Atp6v1d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554662,854,889 - 2,869,950 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554662,855,597 - 2,869,319 (+)NCBIChiLan1.0ChiLan1.0
ATP6V1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21568,443,858 - 68,465,639 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11467,660,171 - 67,682,150 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01447,913,254 - 47,935,376 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11466,792,168 - 66,813,714 (-)NCBIpanpan1.1PanPan1.1panPan2
ATP6V1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1841,332,581 - 41,354,058 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl841,333,021 - 41,354,320 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha841,024,328 - 41,045,781 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0841,559,923 - 41,581,418 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl841,559,926 - 41,581,376 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1841,178,800 - 41,200,277 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0841,252,376 - 41,273,861 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0841,611,332 - 41,632,798 (-)NCBIUU_Cfam_GSD_1.0
LOC101968194
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511889,779,360 - 89,854,240 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364788,991,091 - 9,065,865 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl791,064,396 - 91,084,913 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1791,065,998 - 91,084,908 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2797,375,524 - 97,394,503 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12444,578,057 - 44,598,918 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2444,578,807 - 44,598,394 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605332,808,011 - 32,828,557 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000016087   ⟹   ENSHGLP00000015921
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473433,640,839 - 33,657,745 (+)Ensembl
RefSeq Acc Id: XM_004837370   ⟹   XP_004837427
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473433,640,842 - 33,658,668 (+)NCBI
RefSeq Acc Id: XR_002390541
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473433,640,842 - 33,669,471 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004837427 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB17644 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015921
  ENSHGLP00100024898
GenBank Protein JAN98190 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004837427   ⟸   XM_004837370
- UniProtKB: G5C7Y3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000015921   ⟸   ENSHGLT00000016087


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011374 Ensembl, ENTREZGENE
  ENSHGLG00100018278 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000016087 ENTREZGENE
  ENSHGLT00100025153 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.3240 UniProtKB/TrEMBL
InterPro V_ATPase_D UniProtKB/TrEMBL
KEGG Report hgl:101723759 UniProtKB/TrEMBL
NCBI Gene Atp6v1d ENTREZGENE
PANTHER PTHR11671 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT D UniProtKB/TrEMBL
Pfam ATP-synt_D UniProtKB/TrEMBL
UniProt G5C7Y3 ENTREZGENE, UniProtKB/TrEMBL