Arhgef2 (Rho/Rac guanine nucleotide exchange factor 2) - Rat Genome Database

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Gene: Arhgef2 (Rho/Rac guanine nucleotide exchange factor 2) Heterocephalus glaber
Analyze
Symbol: Arhgef2
Name: Rho/Rac guanine nucleotide exchange factor 2
RGD ID: 18907797
Description: ENCODES a protein that exhibits small GTPase binding (ortholog); INVOLVED IN actin filament organization (ortholog); asymmetric neuroblast division (ortholog); cell morphogenesis (ortholog); PARTICIPATES IN Reelin signaling pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN dendritic shaft (ortholog); glutamatergic synapse (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rho guanine nucleotide exchange factor 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,311,512 - 1,362,730 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248851,314,885 - 1,362,730 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
actin filament organization  (IEA,ISO)
asymmetric neuroblast division  (ISO)
cell differentiation  (IEA)
cell division  (IEA)
cell morphogenesis  (IEA,ISO)
cellular hyperosmotic response  (ISO)
cellular response to muramyl dipeptide  (ISO)
cellular response to tumor necrosis factor  (ISO)
establishment of mitotic spindle orientation  (ISO)
immune system process  (IEA)
innate immune response  (IEA)
negative regulation of extrinsic apoptotic signaling pathway via death domain receptors  (ISO)
negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress  (ISO)
negative regulation of microtubule depolymerization  (ISO)
negative regulation of necroptotic process  (ISO)
negative regulation of neurogenesis  (ISO)
negative regulation of podosome assembly  (ISO)
nervous system development  (IEA)
positive regulation of epidermal growth factor receptor signaling pathway  (ISO)
positive regulation of ERK1 and ERK2 cascade  (ISO)
positive regulation of interleukin-6 production  (ISO)
positive regulation of metalloendopeptidase activity  (ISO)
positive regulation of neuron differentiation  (IEA)
positive regulation of neuron migration  (ISO)
positive regulation of NF-kappaB transcription factor activity  (ISO)
positive regulation of p38MAPK cascade  (ISO)
positive regulation of peptidyl-tyrosine phosphorylation  (ISO)
positive regulation of Rac protein signal transduction  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
positive regulation of tumor necrosis factor production  (ISO)
positive regulation of wound healing  (ISO)
regulation of Rho protein signal transduction  (IEA,ISO)
tumor necrosis factor-mediated signaling pathway  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Arhgef2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,311,512 - 1,362,730 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248851,314,885 - 1,362,730 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
ARHGEF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381155,946,854 - 155,979,617 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1155,946,851 - 156,007,070 (-)Ensemblhg38GRCh38
GRCh371155,916,645 - 155,949,408 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,183,269 - 154,214,575 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341152,729,718 - 152,761,024NCBI
Celera1128,989,509 - 129,021,228 (-)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,277,505 - 127,309,545 (-)NCBIHuRef
CHM1_11157,312,414 - 157,344,123 (-)NCBICHM1_1
T2T-CHM13v2.01155,084,975 - 155,117,734 (-)NCBIT2T-CHM13v2.0
Arhgef2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,500,427 - 88,556,839 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,513,273 - 88,555,359 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38388,593,105 - 88,649,532 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,605,966 - 88,648,052 (+)Ensemblmm10GRCm38
MGSCv37388,425,028 - 88,451,974 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36388,707,065 - 88,732,841 (+)NCBIMGSCv36mm8
Celera388,660,982 - 88,688,007 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.9NCBI
Arhgef2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,358,909 - 176,416,178 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2176,358,904 - 176,417,646 (+)EnsemblGRCr8
mRatBN7.22174,061,126 - 174,118,355 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,062,976 - 174,118,355 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2181,236,801 - 181,264,663 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02179,259,164 - 179,287,026 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,859,429 - 173,887,003 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,964,100 - 188,022,847 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,977,008 - 188,021,377 (+)Ensemblrn6Rnor6.0
Rnor_5.02207,366,791 - 207,423,801 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42180,748,313 - 180,775,656 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2168,035,282 - 168,062,671 (+)NCBICelera
RGSC_v3.12180,698,418 - 180,725,761 (+)NCBI
Cytogenetic Map2q34NCBI
Arhgef2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,149,107 - 2,197,153 (-)Ensembl
ChiLan1.0NW_0049555452,149,107 - 2,192,986 (-)NCBIChiLan1.0ChiLan1.0
ARHGEF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,846,340 - 93,905,998 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1193,591,947 - 93,637,756 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,282,514 - 131,326,535 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,112,040 - 135,177,186 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,112,040 - 135,159,299 (-)EnsemblpanPan2panpan1.1
ARHGEF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,835,322 - 41,850,488 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,812,353 - 41,850,488 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha741,324,784 - 41,340,572 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0741,671,709 - 41,718,518 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl741,679,446 - 41,718,514 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,482,812 - 41,498,603 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,536,462 - 41,552,253 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,820,637 - 41,836,427 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Arhgef2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,182,941 - 26,216,578 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,214,401 - 5,245,021 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,213,323 - 5,230,861 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGEF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl494,026,386 - 94,080,420 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1494,026,391 - 94,082,206 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,769,501 - 102,823,704 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARHGEF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,884,220 - 7,927,738 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,905,662 - 7,930,657 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660387,176,051 - 7,229,194 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000011787   ⟹   ENSHGLP00000011659
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248851,311,512 - 1,362,730 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000011788   ⟹   ENSHGLP00000011660
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248851,311,512 - 1,338,380 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000011789   ⟹   ENSHGLP00000011661
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248851,311,512 - 1,334,571 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000011790   ⟹   ENSHGLP00000011662
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248851,311,512 - 1,330,930 (-)Ensembl
RefSeq Acc Id: XM_004871162   ⟹   XP_004871219
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248851,314,885 - 1,337,731 (-)NCBI
RefSeq Acc Id: XM_004871163   ⟹   XP_004871220
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248851,314,885 - 1,337,731 (-)NCBI
RefSeq Acc Id: XM_021249284   ⟹   XP_021104943
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248851,314,885 - 1,344,115 (-)NCBI
RefSeq Acc Id: XM_021249285   ⟹   XP_021104944
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248851,314,885 - 1,354,363 (-)NCBI
RefSeq Acc Id: XM_021249286   ⟹   XP_021104945
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248851,314,885 - 1,344,115 (-)NCBI
RefSeq Acc Id: XM_021249287   ⟹   XP_021104946
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248851,314,885 - 1,344,115 (-)NCBI
RefSeq Acc Id: XM_021249288   ⟹   XP_021104947
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248851,314,885 - 1,331,754 (-)NCBI
RefSeq Acc Id: XM_021249289   ⟹   XP_021104948
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248851,314,885 - 1,362,730 (-)NCBI
RefSeq Acc Id: XM_021249290   ⟹   XP_021104949
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248851,314,885 - 1,334,574 (-)NCBI
RefSeq Acc Id: XM_021249291   ⟹   XP_021104950
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248851,314,885 - 1,338,004 (-)NCBI
RefSeq Acc Id: XM_021249292   ⟹   XP_021104951
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248851,314,885 - 1,342,762 (-)NCBI
RefSeq Acc Id: XM_021249293   ⟹   XP_021104952
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248851,314,885 - 1,339,331 (-)NCBI
RefSeq Acc Id: XM_021249294   ⟹   XP_021104953
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248851,314,885 - 1,337,528 (-)NCBI
RefSeq Acc Id: XP_021104948   ⟸   XM_021249289
- Peptide Label: isoform X2
- UniProtKB: G5ARA7 (UniProtKB/TrEMBL),   A0AAX6S931 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104944   ⟸   XM_021249285
- Peptide Label: isoform X2
- UniProtKB: G5ARA7 (UniProtKB/TrEMBL),   A0AAX6S931 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104946   ⟸   XM_021249287
- Peptide Label: isoform X4
- UniProtKB: G5ARA7 (UniProtKB/TrEMBL),   A0AAX6S8P5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104943   ⟸   XM_021249284
- Peptide Label: isoform X1
- UniProtKB: G5ARA7 (UniProtKB/TrEMBL),   A0AAX6S7R4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104945   ⟸   XM_021249286
- Peptide Label: isoform X3
- UniProtKB: A0A0N8ETF0 (UniProtKB/TrEMBL),   G5ARA7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104951   ⟸   XM_021249292
- Peptide Label: isoform X8
- UniProtKB: G5ARA7 (UniProtKB/TrEMBL),   A0AAX6S6A2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104952   ⟸   XM_021249293
- Peptide Label: isoform X9
- UniProtKB: G5ARA7 (UniProtKB/TrEMBL),   A0AAX6S4P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104950   ⟸   XM_021249291
- Peptide Label: isoform X7
- UniProtKB: G5ARA7 (UniProtKB/TrEMBL),   A0AAX6SB77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004871220   ⟸   XM_004871163
- Peptide Label: isoform X11
- UniProtKB: G5ARA7 (UniProtKB/TrEMBL),   A0AAX6QB78 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004871219   ⟸   XM_004871162
- Peptide Label: isoform X10
- UniProtKB: G5ARA7 (UniProtKB/TrEMBL),   A0AAX6QB54 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104953   ⟸   XM_021249294
- Peptide Label: isoform X9
- UniProtKB: G5ARA7 (UniProtKB/TrEMBL),   A0AAX6S4P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104949   ⟸   XM_021249290
- Peptide Label: isoform X6
- UniProtKB: G5ARA7 (UniProtKB/TrEMBL),   A0AAX6S8E2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104947   ⟸   XM_021249288
- Peptide Label: isoform X5
- UniProtKB: G5ARA7 (UniProtKB/TrEMBL),   A0AAX6SAB1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000011662   ⟸   ENSHGLT00000011790
Ensembl Acc Id: ENSHGLP00000011659   ⟸   ENSHGLT00000011787
Ensembl Acc Id: ENSHGLP00000011660   ⟸   ENSHGLT00000011788
Ensembl Acc Id: ENSHGLP00000011661   ⟸   ENSHGLT00000011789


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008361 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000011787 ENTREZGENE
  ENSHGLT00000011788 ENTREZGENE
  ENSHGLT00000011789 ENTREZGENE
  ENSHGLT00000011790 ENTREZGENE
Gene3D-CATH 1.20.900.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  3.30.60.20 UniProtKB/TrEMBL
InterPro ARHGEF2_PH UniProtKB/TrEMBL
  C1-like_sf UniProtKB/TrEMBL
  DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  PE/DAG-bd UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_16 UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  Rho_GEF UniProtKB/TrEMBL
NCBI Gene Arhgef2 ENTREZGENE
PANTHER AGAP007712-PA UniProtKB/TrEMBL
  RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2 UniProtKB/TrEMBL
Pfam PH_16 UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
PROSITE DH_2 UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  ZF_DAG_PE_1 UniProtKB/TrEMBL
  ZF_DAG_PE_2 UniProtKB/TrEMBL
SMART RhoGEF UniProtKB/TrEMBL
  SM00109 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF48065 UniProtKB/TrEMBL
  SSF57889 UniProtKB/TrEMBL
UniProt A0A0N8ETF0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QB54 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QB78 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S4P8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S6A2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S7R4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S8E2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S8P5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S931 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SAB1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SB77 ENTREZGENE, UniProtKB/TrEMBL
  G5ARA7 ENTREZGENE, UniProtKB/TrEMBL