LOC101698338 (E3 SUMO-protein ligase RanBP2) - Rat Genome Database

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Gene: LOC101698338 (E3 SUMO-protein ligase RanBP2) Heterocephalus glaber
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Symbol: LOC101698338 (Ensembl: RANBP2)
Name: E3 SUMO-protein ligase RanBP2
RGD ID: 18907688
Description: ENCODES a protein that exhibits kinase activator activity (ortholog); peptidyl-prolyl cis-trans isomerase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN centrosome localization (ortholog); nuclear export (ortholog); protein sumoylation (ortholog); PARTICIPATES IN CRM1 export pathway; mitochondria transport pathway; ASSOCIATED WITH Alpers-Huttenlocher syndrome (ortholog); anodontia (ortholog); autism spectrum disorder (ortholog); FOUND IN annulate lamellae (ortholog); cytoplasmic periphery of the nuclear pore complex (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RAN binding protein 2; Ranbp2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474911,862,760 - 11,923,958 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474911,862,670 - 11,923,291 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101698338
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474911,862,760 - 11,923,958 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474911,862,670 - 11,923,291 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RANBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382108,719,482 - 109,842,301 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2108,719,482 - 108,785,810 (+)EnsemblGRCh38hg38GRCh38
GRCh372109,335,938 - 109,402,265 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362108,702,369 - 108,768,699 (+)NCBINCBI36Build 36hg18NCBI36
Build 342108,794,454 - 108,859,768NCBI
Celera2103,645,916 - 103,712,243 (+)NCBICelera
Cytogenetic Map2q13NCBI
HuRef2102,934,349 - 103,000,733 (+)NCBIHuRef
CHM1_12109,340,280 - 109,406,595 (+)NCBICHM1_1
T2T-CHM13v2.02109,180,084 - 110,303,989 (+)NCBIT2T-CHM13v2.0
Ranbp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391058,282,674 - 58,329,977 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1058,282,742 - 58,330,178 (+)EnsemblGRCm39 Ensembl
GRCm381058,446,852 - 58,494,155 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1058,446,920 - 58,494,356 (+)EnsemblGRCm38mm10GRCm38
MGSCv371057,909,600 - 57,956,903 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361057,842,209 - 57,889,512 (+)NCBIMGSCv36mm8
Celera1059,184,895 - 59,203,874 (+)NCBICelera
Celera712,211,992 - 12,212,429 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1029.34NCBI
Ranbp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82026,984,520 - 27,036,573 (+)NCBIGRCr8
mRatBN7.22026,442,156 - 26,493,481 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2026,442,217 - 26,493,481 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2027,444,577 - 27,495,869 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02026,830,924 - 26,882,082 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02027,578,942 - 27,630,203 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02028,027,054 - 28,076,664 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.02028,365,538 - 28,375,676 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2028,365,988 - 28,375,791 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl2028,027,054 - 28,076,664 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02029,846,539 - 29,896,149 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02030,181,409 - 30,191,111 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42037,271,467 - 37,322,723 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2027,892,535 - 27,943,825 (+)NCBICelera
Cytogenetic Map20q11NCBI
Ranbp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547012,180,544 - 12,249,555 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547012,180,426 - 12,247,737 (+)NCBIChiLan1.0ChiLan1.0
LOC100989340
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21220,849,954 - 20,915,591 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A20,852,719 - 20,920,058 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A94,961,024 - 95,029,437 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A110,010,961 - 110,039,769 (+)NCBIpanpan1.1PanPan1.1panPan2
RANBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11035,088,175 - 35,181,248 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1035,088,872 - 35,181,129 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1035,010,394 - 35,103,514 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01035,940,061 - 36,033,454 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1035,940,082 - 36,033,437 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11035,669,581 - 35,762,815 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01035,952,703 - 36,045,859 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01036,144,312 - 36,238,211 (-)NCBIUU_Cfam_GSD_1.0
Ranbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629292,063,973 - 92,136,842 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936829261,129 - 332,999 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936829261,017 - 333,910 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100511376
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl347,531,359 - 47,601,495 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1347,531,362 - 47,601,328 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2349,693,982 - 49,735,050 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RANBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11412,250,986 - 12,318,801 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1412,251,007 - 12,319,735 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660807,392,456 - 7,462,274 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000026787   ⟹   ENSHGLP00000026551
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474911,862,760 - 11,923,958 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000026788   ⟹   ENSHGLP00000026552
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474911,862,760 - 11,922,404 (+)Ensembl
RefSeq Acc Id: XM_004844514   ⟹   XP_004844571
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474911,862,670 - 11,923,291 (+)NCBI
RefSeq Acc Id: XM_004844515   ⟹   XP_004844572
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474911,862,670 - 11,923,291 (+)NCBI
RefSeq Acc Id: XM_004844516   ⟹   XP_004844573
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474911,862,670 - 11,923,291 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004844571 (Get FASTA)   NCBI Sequence Viewer  
  XP_004844572 (Get FASTA)   NCBI Sequence Viewer  
  XP_004844573 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026551
RefSeq Acc Id: XP_004844571   ⟸   XM_004844514
- Peptide Label: isoform X1
- UniProtKB: G5CB92 (UniProtKB/TrEMBL),   A0AAX6P6I2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004844572   ⟸   XM_004844515
- Peptide Label: isoform X2
- UniProtKB: G5CB92 (UniProtKB/TrEMBL),   A0AAX6P5S2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004844573   ⟸   XM_004844516
- Peptide Label: isoform X3
- UniProtKB: G5CB92 (UniProtKB/TrEMBL),   A0AAX6P5V2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000026552   ⟸   ENSHGLT00000026788
Ensembl Acc Id: ENSHGLP00000026551   ⟸   ENSHGLT00000026787


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018887 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026787 ENTREZGENE
Gene3D-CATH Cyclophilin-like UniProtKB/TrEMBL
  Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) UniProtKB/TrEMBL
  Tetratricopeptide repeat domain UniProtKB/TrEMBL
  Zinc finger, RanBP2-type UniProtKB/TrEMBL
InterPro Cyclophilin-like_dom_sf UniProtKB/TrEMBL
  Cyclophilin-type_PPIase_CS UniProtKB/TrEMBL
  Cyclophilin-type_PPIase_dom UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/TrEMBL
  IR1-M UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Ran_bind_dom UniProtKB/TrEMBL
  RanBP1-like UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
  Znf_RanBP2 UniProtKB/TrEMBL
  Znf_RanBP2_sf UniProtKB/TrEMBL
NCBI Gene LOC101698338 ENTREZGENE
PANTHER E3 SUMO-PROTEIN LIGASE RANBP2 UniProtKB/TrEMBL
  RAN BINDING PROTEIN UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
  IR1-M UniProtKB/TrEMBL
  Pro_isomerase UniProtKB/TrEMBL
  Ran_BP1 UniProtKB/TrEMBL
  zf-RanBP UniProtKB/TrEMBL
PRINTS CSAPPISMRASE UniProtKB/TrEMBL
PROSITE CSA_PPIASE_1 UniProtKB/TrEMBL
  CSA_PPIASE_2 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F3_4 UniProtKB/TrEMBL
  RANBD1 UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
  ZF_RANBP2_1 UniProtKB/TrEMBL
  ZF_RANBP2_2 UniProtKB/TrEMBL
SMART RanBD UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
  ZnF_RBZ UniProtKB/TrEMBL
Superfamily-SCOP Cyclophilin-like UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
  Ran binding protein zinc finger-like UniProtKB/TrEMBL
  TPR-like UniProtKB/TrEMBL
UniProt A0AAX6P5S2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6P5V2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6P6I2 ENTREZGENE, UniProtKB/TrEMBL
  G5CB92 ENTREZGENE, UniProtKB/TrEMBL