Atp6v1h (ATPase H+ transporting V1 subunit H) - Rat Genome Database

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Gene: Atp6v1h (ATPase H+ transporting V1 subunit H) Heterocephalus glaber
Analyze
Symbol: Atp6v1h
Name: ATPase H+ transporting V1 subunit H
RGD ID: 18906232
Description: ENCODES a protein that exhibits proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN endocytosis (ortholog); FOUND IN extrinsic component of synaptic vesicle membrane (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase subunit H
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247351,831,597 - 1,961,669 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247351,785,558 - 1,957,103 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp6v1h
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247351,831,597 - 1,961,669 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247351,785,558 - 1,957,103 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATP6V1H
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38853,715,543 - 53,843,245 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl853,715,543 - 53,843,558 (-)EnsemblGRCh38hg38GRCh38
GRCh37854,628,103 - 54,755,805 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36854,790,668 - 54,918,403 (-)NCBINCBI36Build 36hg18NCBI36
Build 34854,790,668 - 54,918,100NCBI
Celera850,618,400 - 50,746,017 (-)NCBICelera
Cytogenetic Map8q11.23NCBI
HuRef850,095,831 - 50,223,373 (-)NCBIHuRef
CHM1_1854,679,992 - 54,807,647 (-)NCBICHM1_1
T2T-CHM13v2.0854,092,959 - 54,220,638 (-)NCBIT2T-CHM13v2.0
Atp6v1h
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915,153,201 - 5,233,438 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15,140,241 - 5,232,752 (+)EnsemblGRCm39 Ensembl
GRCm3815,082,978 - 5,163,213 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15,070,018 - 5,162,529 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715,073,254 - 5,152,630 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615,073,254 - 5,152,630 (+)NCBIMGSCv36mm8
Celera15,091,064 - 5,165,861 (+)NCBICelera
Cytogenetic Map1A1NCBI
cM Map11.85NCBI
Atp6v1h
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8519,176,849 - 19,282,516 (-)NCBIGRCr8
mRatBN7.2514,379,029 - 14,484,703 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl514,378,257 - 14,537,962 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx516,571,060 - 16,677,083 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0518,182,103 - 18,284,839 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0517,905,754 - 18,011,765 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0514,262,352 - 14,367,898 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl514,262,349 - 14,367,898 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0519,044,551 - 19,149,940 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4514,578,149 - 14,683,476 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera513,750,922 - 13,855,545 (-)NCBICelera
Cytogenetic Map5q12NCBI
Atp6v1h
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545413,099,432 - 13,213,067 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545413,099,488 - 13,213,018 (-)NCBIChiLan1.0ChiLan1.0
ATP6V1H
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2769,364,234 - 69,480,623 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1845,088,917 - 45,205,842 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0850,152,664 - 50,269,290 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1847,532,058 - 47,647,588 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl847,528,972 - 47,647,588 (-)Ensemblpanpan1.1panPan2
ATP6V1H
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1295,381,693 - 5,544,062 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl295,260,175 - 5,508,960 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha295,757,217 - 5,919,022 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0295,460,339 - 5,622,315 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl295,339,534 - 5,587,770 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1295,391,991 - 5,557,297 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0295,601,511 - 5,762,748 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0295,683,983 - 5,845,578 (-)NCBIUU_Cfam_GSD_1.0
Atp6v1h
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530374,035,109 - 74,138,306 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936496646,760 - 750,461 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936496647,171 - 750,369 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1H
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl477,211,493 - 77,302,162 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1477,211,493 - 77,269,757 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2484,281,799 - 84,340,043 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V1H
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1849,809,668 - 49,926,735 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl849,809,580 - 49,926,706 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603992,012,516 - 92,132,542 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004837512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004837513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004837514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021248844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01010451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01010452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01010453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01010454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01010455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01010456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01010457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01010458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01010459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01010460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01010461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01010462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01010463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01010464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01006648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH168613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000026671   ⟹   ENSHGLP00000026435
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247351,831,597 - 1,961,669 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000026672   ⟹   ENSHGLP00000026436
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247351,831,597 - 1,961,669 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000026673   ⟹   ENSHGLP00000026437
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247351,833,750 - 1,956,824 (+)Ensembl
RefSeq Acc Id: XM_004837512   ⟹   XP_004837569
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247351,832,191 - 1,956,824 (+)NCBI
RefSeq Acc Id: XM_004837513   ⟹   XP_004837570
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247351,785,558 - 1,956,824 (+)NCBI
RefSeq Acc Id: XM_004837514   ⟹   XP_004837571
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247351,832,191 - 1,957,103 (+)NCBI
RefSeq Acc Id: XM_021248844   ⟹   XP_021104503
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247351,833,750 - 1,957,103 (+)NCBI
RefSeq Acc Id: XP_004837570   ⟸   XM_004837513
- Peptide Label: isoform X1
- UniProtKB: G5B615 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004837571   ⟸   XM_004837514
- Peptide Label: isoform X2
- UniProtKB: A0AAX6NV32 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004837569   ⟸   XM_004837512
- Peptide Label: isoform X1
- UniProtKB: G5B615 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104503   ⟸   XM_021248844
- Peptide Label: isoform X1
- UniProtKB: G5B615 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000026435   ⟸   ENSHGLT00000026671
Ensembl Acc Id: ENSHGLP00000026437   ⟸   ENSHGLT00000026673
Ensembl Acc Id: ENSHGLP00000026436   ⟸   ENSHGLT00000026672


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018810 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100011108 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000026671 ENTREZGENE
  ENSHGLT00000026672 ENTREZGENE
  ENSHGLT00000026673 ENTREZGENE
  ENSHGLT00000072874 UniProtKB/TrEMBL
  ENSHGLT00100074068 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
  1.25.40.150 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  ATPase_V1-cplx_hsu UniProtKB/TrEMBL
  ATPase_V1-cplx_hsu_C UniProtKB/TrEMBL
  ATPase_V1-cplx_hsu_C_sf UniProtKB/TrEMBL
KEGG Report hgl:101710987 UniProtKB/TrEMBL
NCBI Gene Atp6v1h ENTREZGENE
PANTHER PTHR10698 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT H UniProtKB/TrEMBL
Pfam V-ATPase_H_C UniProtKB/TrEMBL
  V-ATPase_H_N UniProtKB/TrEMBL
PIRSF ATPase_V1_H UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0AAX6NV32 ENTREZGENE, UniProtKB/TrEMBL
  G5B615 ENTREZGENE, UniProtKB/TrEMBL