LOC101698463 (HLA class II histocompatibility antigen, DP alpha 1 chain) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC101698463 (HLA class II histocompatibility antigen, DP alpha 1 chain) Heterocephalus glaber
Analyze
Symbol: LOC101698463 (Ensembl: HLA-DPA1)
Name: HLA class II histocompatibility antigen, DP alpha 1 chain
RGD ID: 18905169
Description: ENCODES a protein that exhibits peptide antigen binding (ortholog); INVOLVED IN antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); cellular response to type II interferon (ortholog); positive regulation of T cell activation (ortholog); ASSOCIATED WITH allergic asthma (ortholog); asthma (ortholog); Chronic Hepatitis B (ortholog); FOUND IN cell surface (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,674,448 - 23,683,662 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475423,674,935 - 23,683,044 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101698463
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,674,448 - 23,683,662 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475423,674,935 - 23,683,044 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HLA-DPA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38633,064,569 - 33,080,748 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl633,064,569 - 33,080,775 (-)EnsemblGRCh38hg38GRCh38
GRCh37633,032,346 - 33,048,525 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36633,140,772 - 33,149,356 (-)NCBINCBI36Build 36hg18NCBI36
Celera634,581,565 - 34,590,149 (-)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef632,774,786 - 32,790,995 (-)NCBIHuRef
CHM1_1633,034,023 - 33,050,238 (-)NCBICHM1_1
T2T-CHM13v2.0632,885,920 - 32,902,099 (-)NCBIT2T-CHM13v2.0
H2-Pa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,303,587 - 34,304,826 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,303,575 - 34,304,797 (+)EnsemblGRCm39 Ensembl
GRCm381734,084,613 - 34,085,852 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,084,601 - 34,085,823 (+)EnsemblGRCm38mm10GRCm38
MGSCv371734,221,558 - 34,222,797 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,695,067 - 33,696,306 (+)NCBIMGSCv36mm8
Celera1736,830,794 - 36,832,033 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
RT1-Ha
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,762,425 - 4,772,439 (-)NCBIGRCr8
mRatBN7.2204,760,631 - 4,770,662 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,760,118 - 4,770,244 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx205,516,851 - 5,522,293 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0204,878,601 - 4,884,043 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,359,983 - 5,365,396 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,875,478 - 3,885,140 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,875,706 - 3,881,461 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,955,076 - 5,964,545 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,902,458 - 4,907,767 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera206,365,531 - 6,370,840 (-)NCBICelera
Cytogenetic Map20p12NCBI
LOC102025724
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,643,238 - 1,651,071 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554371,644,037 - 1,657,094 (-)NCBIChiLan1.0ChiLan1.0
LOC100995577
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2547,543,470 - 47,552,129 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1643,415,077 - 43,423,738 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0632,637,826 - 32,646,501 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1633,752,638 - 33,768,418 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl633,752,638 - 33,761,417 (-)Ensemblpanpan1.1panPan2
LOC101958908
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,209,458 - 38,216,760 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,743,456 - 25,750,907 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647625,743,512 - 25,750,809 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MHC-DPA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11739,009,361 - 39,017,978 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604432,881,227 - 32,886,122 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000027331   ⟹   ENSHGLP00000027091
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475423,674,448 - 23,683,662 (+)Ensembl
RefSeq Acc Id: XM_004846845   ⟹   XP_004846902
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475423,674,935 - 23,683,044 (+)NCBI
RefSeq Acc Id: XM_021260037   ⟹   XP_021115696
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475423,674,935 - 23,680,473 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004846902 (Get FASTA)   NCBI Sequence Viewer  
  XP_021115696 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027091
RefSeq Acc Id: XP_004846902   ⟸   XM_004846845
- Peptide Label: isoform X1
- UniProtKB: G5BB02 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115696   ⟸   XM_021260037
- Peptide Label: isoform X2
- UniProtKB: G5BB02 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000027091   ⟸   ENSHGLT00000027331


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019266 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027331 ENTREZGENE
Gene3D-CATH Immunoglobulins UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC/Immunoglobulin UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_II_a/b_N UniProtKB/TrEMBL
  MHC_II_a_N UniProtKB/TrEMBL
NCBI Gene LOC101698463 ENTREZGENE
PANTHER HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DP ALPHA 1 CHAIN UniProtKB/TrEMBL
  MHC CLASS II-RELATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_II_alpha UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
  MHC_II_alpha UniProtKB/TrEMBL
Superfamily-SCOP Immunoglobulin UniProtKB/TrEMBL
  MHC antigen-recognition domain UniProtKB/TrEMBL
UniProt A0AAX6T103_HETGA UniProtKB/TrEMBL
  G5BB02 ENTREZGENE, UniProtKB/TrEMBL