Slc25a42 (solute carrier family 25 member 42) - Rat Genome Database

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Gene: Slc25a42 (solute carrier family 25 member 42) Heterocephalus glaber
Analyze
Symbol: Slc25a42
Name: solute carrier family 25 member 42
RGD ID: 18903662
Description: ENCODES a protein that exhibits ADP phosphatase activity (ortholog); ADP transmembrane transporter activity (ortholog); AMP transmembrane transporter activity (ortholog); INVOLVED IN ADP transport (ortholog); AMP transport (ortholog); ATP transport (ortholog); ASSOCIATED WITH genetic disease (ortholog); Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); mitochondrial myopathy (ortholog); FOUND IN membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mitochondrial coenzyme A transporter SLC25A42
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249082,033,908 - 2,056,590 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249082,033,770 - 2,056,590 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
mitochondrion  (IEA)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Slc25a42
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249082,033,908 - 2,056,590 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249082,033,770 - 2,056,590 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC25A42
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381919,063,994 - 19,113,030 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1919,063,994 - 19,113,030 (+)EnsemblGRCh38hg38GRCh38
GRCh371919,174,803 - 19,223,839 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361919,035,808 - 19,084,694 (+)NCBINCBI36Build 36hg18NCBI36
Celera1919,079,646 - 19,128,541 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1918,738,683 - 18,787,725 (+)NCBIHuRef
CHM1_11919,174,500 - 19,223,537 (+)NCBICHM1_1
T2T-CHM13v2.01919,199,813 - 19,248,846 (+)NCBIT2T-CHM13v2.0
Slc25a42
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,636,990 - 70,664,931 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl870,636,990 - 70,664,955 (-)EnsemblGRCm39 Ensembl
GRCm38870,184,340 - 70,212,281 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,184,340 - 70,212,305 (-)EnsemblGRCm38mm10GRCm38
MGSCv37872,708,239 - 72,736,180 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,113,329 - 73,141,245 (-)NCBIMGSCv36mm8
Celera872,740,228 - 72,768,104 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.15NCBI
Slc25a42
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81619,247,874 - 19,286,598 (+)NCBIGRCr8
mRatBN7.21619,213,914 - 19,251,990 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1619,213,950 - 19,237,025 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1619,253,706 - 19,276,679 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01620,386,024 - 20,409,006 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01619,306,666 - 19,329,639 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,962,144 - 21,000,191 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,962,227 - 20,985,225 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,812,201 - 20,850,121 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,697,100 - 19,720,036 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1619,402,645 - 19,425,671 (+)NCBICelera
Cytogenetic Map16p14NCBI
Slc25a42
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555242,675,747 - 2,683,282 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555242,674,508 - 2,683,304 (-)NCBIChiLan1.0ChiLan1.0
SLC25A42
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22023,925,727 - 23,974,607 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11922,931,914 - 22,980,745 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01918,501,567 - 18,550,368 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11919,504,325 - 19,553,292 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1919,504,325 - 19,553,158 (+)Ensemblpanpan1.1panPan2
SLC25A42
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12044,043,672 - 44,074,691 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2044,044,665 - 44,065,282 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2043,960,305 - 43,991,326 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02044,531,671 - 44,562,714 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2044,531,676 - 44,562,648 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12043,769,080 - 43,800,107 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02044,178,144 - 44,209,391 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02044,454,014 - 44,485,059 (-)NCBIUU_Cfam_GSD_1.0
Slc25a42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118202,741,224 - 202,770,526 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365962,290,362 - 2,319,501 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365962,290,375 - 2,319,449 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A42
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl258,753,371 - 58,801,832 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1258,753,363 - 58,803,356 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2258,580,943 - 58,599,690 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A42
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1617,529,048 - 17,577,092 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl617,529,312 - 17,577,093 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660741,743,963 - 1,793,084 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000012485   ⟹   ENSHGLP00000012350
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249082,033,908 - 2,056,590 (+)Ensembl
RefSeq Acc Id: XM_013068713   ⟹   XP_012924167
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249082,033,770 - 2,056,590 (+)NCBI
Protein Sequences
Protein RefSeqs XP_012924167 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012350
GenBank Protein JAN99177 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_012924167   ⟸   XM_013068713
- UniProtKB: A0A0P6JEX3 (UniProtKB/TrEMBL),   G5C5B9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000012350   ⟸   ENSHGLT00000012485


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008826 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012485 ENTREZGENE
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro DNA_mismatch_repair_CS UniProtKB/TrEMBL
  Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
NCBI Gene Slc25a42 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 25 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PRINTS MITOCARRIER UniProtKB/TrEMBL
PROSITE DNA_MISMATCH_REPAIR_1 UniProtKB/TrEMBL
  SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A0P6JEX3 ENTREZGENE, UniProtKB/TrEMBL
  G5C5B9 ENTREZGENE, UniProtKB/TrEMBL