Atp6v1g3 (ATPase H+ transporting V1 subunit G3) - Rat Genome Database

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Gene: Atp6v1g3 (ATPase H+ transporting V1 subunit G3) Heterocephalus glaber
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Symbol: Atp6v1g3
Name: ATPase H+ transporting V1 subunit G3
RGD ID: 18902290
Description: ENCODES a protein that exhibits ATPase binding (ortholog); INVOLVED IN proton transmembrane transport (inferred); synaptic vesicle lumen acidification (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase subunit G 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247981,891,613 - 1,910,104 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247981,893,699 - 1,910,104 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp6v1g3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247981,891,613 - 1,910,104 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247981,893,699 - 1,910,104 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATP6V1G3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381198,523,222 - 198,540,945 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1198,523,222 - 198,540,945 (-)EnsemblGRCh38hg38GRCh38
GRCh371198,492,352 - 198,510,075 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361196,758,975 - 196,776,698 (-)NCBINCBI36Build 36hg18NCBI36
Build 341195,224,010 - 195,241,732NCBI
Celera1171,614,921 - 171,632,643 (-)NCBICelera
Cytogenetic Map1q31.3NCBI
HuRef1169,659,548 - 169,677,275 (-)NCBIHuRef
CHM1_11199,914,674 - 199,932,396 (-)NCBICHM1_1
T2T-CHM13v2.01197,783,117 - 197,800,839 (-)NCBIT2T-CHM13v2.0
Atp6v1g3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391138,201,476 - 138,217,200 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1138,201,476 - 138,217,200 (+)EnsemblGRCm39 Ensembl
GRCm381138,273,738 - 138,289,462 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1138,273,738 - 138,289,462 (+)EnsemblGRCm38mm10GRCm38
MGSCv371140,170,315 - 140,186,039 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361140,090,149 - 140,105,873 (+)NCBIMGSCv36mm8
Celera1140,915,081 - 140,930,807 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map160.82NCBI
Atp6v1g3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81352,351,787 - 52,376,784 (+)NCBIGRCr8
mRatBN7.21349,800,256 - 49,825,247 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1349,794,222 - 49,825,247 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1352,418,239 - 52,432,667 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01353,706,130 - 53,720,558 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01350,973,369 - 50,987,782 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01355,265,794 - 55,288,651 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1355,274,199 - 55,288,651 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01360,297,386 - 60,321,789 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41351,462,070 - 51,476,522 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11351,438,095 - 51,489,937 (+)NCBI
Celera1350,095,450 - 50,109,898 (+)NCBICelera
Cytogenetic Map13q13NCBI
Atp6v1g3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540634,910,498 - 34,927,745 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540634,910,498 - 34,927,745 (-)NCBIChiLan1.0ChiLan1.0
ATP6V1G3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2150,834,517 - 50,852,067 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1150,793,764 - 50,811,547 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01174,130,976 - 174,148,524 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11178,440,516 - 178,458,092 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1178,440,516 - 178,458,108 (-)Ensemblpanpan1.1panPan2
ATP6V1G3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.174,368,476 - 4,388,544 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl74,368,418 - 4,388,539 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha74,053,554 - 4,073,662 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.074,054,400 - 4,074,512 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl74,054,387 - 4,074,504 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.174,001,449 - 4,021,551 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.074,102,151 - 4,122,266 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.074,134,335 - 4,154,453 (+)NCBIUU_Cfam_GSD_1.0
Atp6v1g3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934476,227,144 - 76,242,234 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365675,461,760 - 5,476,879 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365675,461,760 - 5,476,893 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1G3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1021,371,257 - 21,410,296 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11021,371,302 - 21,394,817 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21026,048,320 - 26,071,801 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V1G3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12530,867,341 - 30,886,380 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2530,868,161 - 30,886,540 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605531,756,940 - 31,775,447 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000004437   ⟹   ENSHGLP00000004376
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247981,891,613 - 1,910,104 (+)Ensembl
RefSeq Acc Id: XM_004860123   ⟹   XP_004860180
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247981,893,699 - 1,910,104 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004860180 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000004376
GenBank Protein JAN98139 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004860180   ⟸   XM_004860123
- UniProtKB: A0A0P6JUG8 (UniProtKB/TrEMBL),   A0AAX6PUG8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000004376   ⟸   ENSHGLT00000004437


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003196 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000004437 ENTREZGENE
Gene3D-CATH 1.20.5.2950 UniProtKB/TrEMBL
InterPro V-ATPase_G UniProtKB/TrEMBL
NCBI Gene Atp6v1g3 ENTREZGENE
PANTHER PTHR12713 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT G 3 UniProtKB/TrEMBL
Pfam V-ATPase_G UniProtKB/TrEMBL
UniProt A0A0P6JUG8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PUG8 ENTREZGENE, UniProtKB/TrEMBL