Trim66 (tripartite motif containing 66) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Trim66 (tripartite motif containing 66) Heterocephalus glaber
Analyze
Symbol: Trim66
Name: tripartite motif containing 66
RGD ID: 18900725
Description: ENCODES a protein that exhibits chromatin binding (ortholog); identical protein binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); FOUND IN chromocenter (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tripartite motif-containing protein 66
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624766779,289 - 833,434 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624766772,565 - 833,372 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IEA)
chromocenter  (ISO)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Trim66
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624766779,289 - 833,434 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624766772,565 - 833,372 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TRIM66
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38118,612,040 - 8,683,231 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl118,612,037 - 8,682,694 (-)EnsemblGRCh38hg38GRCh38
GRCh37118,633,587 - 8,704,778 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36118,593,069 - 8,650,397 (-)NCBINCBI36Build 36hg18NCBI36
Celera118,751,219 - 8,798,014 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef118,301,197 - 8,348,377 (-)NCBIHuRef
CHM1_1118,632,498 - 8,679,276 (-)NCBICHM1_1
T2T-CHM13v2.0118,693,787 - 8,764,985 (-)NCBIT2T-CHM13v2.0
Trim66
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397109,048,208 - 109,115,948 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7109,048,213 - 109,107,341 (-)EnsemblGRCm39 Ensembl
GRCm387109,449,001 - 109,516,759 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7109,449,006 - 109,508,134 (-)EnsemblGRCm38mm10GRCm38
MGSCv377116,592,515 - 116,651,648 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367109,240,180 - 109,284,915 (-)NCBIMGSCv36mm8
Celera7109,421,974 - 109,482,059 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.21NCBI
Trim66
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81172,903,771 - 172,974,475 (-)NCBIGRCr8
mRatBN7.21163,468,944 - 163,539,633 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1163,470,350 - 163,537,185 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1171,812,521 - 171,865,327 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01178,998,572 - 179,051,372 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01171,681,164 - 171,734,001 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01174,062,176 - 174,132,732 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1174,066,911 - 174,119,815 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01181,050,864 - 181,118,794 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41167,049,540 - 167,112,676 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1161,375,583 - 161,428,378 (-)NCBICelera
Cytogenetic Map1q33NCBI
Trim66
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541424,406,205 - 24,459,601 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541424,405,986 - 24,459,729 (-)NCBIChiLan1.0ChiLan1.0
TRIM66
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2911,042,863 - 11,113,387 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11110,996,886 - 11,048,218 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0118,739,892 - 8,807,121 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1118,482,889 - 8,549,669 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl118,485,319 - 8,519,067 (-)Ensemblpanpan1.1panPan2
TRIM66
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12132,037,874 - 32,097,362 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2132,044,841 - 32,097,357 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2131,605,638 - 31,665,919 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02132,910,669 - 32,970,942 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2132,918,427 - 32,965,302 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12132,179,916 - 32,240,153 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02132,348,328 - 32,406,280 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02132,642,146 - 32,699,825 (-)NCBIUU_Cfam_GSD_1.0
Trim66
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494753,315,008 - 53,374,719 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365289,358,950 - 9,529,842 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365289,358,976 - 9,410,425 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM66
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9738,551 - 764,472 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19711,571 - 769,799 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29904,459 - 936,367 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM66
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1156,118,792 - 56,180,748 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038153,814,800 - 153,872,013 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000015437   ⟹   ENSHGLP00000015281
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624766779,289 - 833,434 (-)Ensembl
RefSeq Acc Id: XM_013074654   ⟹   XP_012930108
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624766772,565 - 833,372 (-)NCBI
RefSeq Acc Id: XM_021263755   ⟹   XP_021119414
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624766772,565 - 815,782 (-)NCBI
RefSeq Acc Id: XM_021263756   ⟹   XP_021119415
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624766772,565 - 816,360 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012930108 (Get FASTA)   NCBI Sequence Viewer  
  XP_021119414 (Get FASTA)   NCBI Sequence Viewer  
  XP_021119415 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015281
RefSeq Acc Id: XP_012930108   ⟸   XM_013074654
- UniProtKB: A0AAX6QXH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021119415   ⟸   XM_021263756
- UniProtKB: A0AAX6QXH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021119414   ⟸   XM_021263755
- UniProtKB: A0AAX6QXH8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000015281   ⟸   ENSHGLT00000015437


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010917 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015437 ENTREZGENE
NCBI Gene Trim66 ENTREZGENE
UniProt A0AAX6QXH8 ENTREZGENE, UniProtKB/TrEMBL