SLC44A2 (solute carrier family 44 member 2 (CTL2 blood group)) - Rat Genome Database

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Gene: SLC44A2 (solute carrier family 44 member 2 (CTL2 blood group)) Chlorocebus sabaeus
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Symbol: SLC44A2
Name: solute carrier family 44 member 2 (CTL2 blood group)
RGD ID: 18796031
Description: ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); INVOLVED IN choline transport (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); familial hypercholesterolemia (ortholog); immunodeficiency 35 (ortholog); FOUND IN membrane (inferred); mitochondrial outer membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: choline transporter-like protein 2; LOC103233907; solute carrier family 44 member 2; uncharacterized LOC103233907
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.169,607,224 - 9,646,535 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl69,630,113 - 9,646,389 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607410,326,343 - 10,349,797 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC44A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.169,607,224 - 9,646,535 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl69,630,113 - 9,646,389 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607410,326,343 - 10,349,797 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SLC44A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381910,602,455 - 10,644,557 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1910,602,457 - 10,644,557 (+)EnsemblGRCh38hg38GRCh38
GRCh371910,713,131 - 10,755,233 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361910,597,229 - 10,616,232 (+)NCBINCBI36Build 36hg18NCBI36
Celera1910,607,867 - 10,649,985 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1910,290,915 - 10,332,787 (+)NCBIHuRef
CHM1_11910,714,363 - 10,756,490 (+)NCBICHM1_1
T2T-CHM13v2.01910,728,929 - 10,771,033 (+)NCBIT2T-CHM13v2.0
Slc44a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39921,232,015 - 21,266,324 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl921,231,994 - 21,266,324 (+)EnsemblGRCm39 Ensembl
GRCm38921,320,719 - 21,355,028 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,320,698 - 21,355,028 (+)EnsemblGRCm38mm10GRCm38
MGSCv37921,142,296 - 21,159,472 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36921,088,254 - 21,105,430 (+)NCBIMGSCv36mm8
Celera918,606,541 - 18,623,717 (+)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.77NCBI
Slc44a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,147,023 - 28,181,496 (+)NCBIGRCr8
mRatBN7.2819,870,867 - 19,905,345 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl819,870,888 - 19,905,342 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx823,908,136 - 23,925,261 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,205,976 - 22,223,103 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,117,890 - 20,135,016 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,351,277 - 22,385,869 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,368,745 - 22,385,864 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0822,405,625 - 22,439,986 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4820,433,914 - 20,451,580 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1820,415,930 - 20,450,341 (+)NCBI
Celera821,279,682 - 21,296,806 (+)NCBICelera
Cytogenetic Map8q13NCBI
Slc44a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554951,791,508 - 1,807,216 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554951,780,766 - 1,804,944 (+)NCBIChiLan1.0ChiLan1.0
SLC44A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22015,520,898 - 15,563,477 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11914,519,485 - 14,562,069 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01910,154,320 - 10,196,898 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11910,815,825 - 10,857,693 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1910,815,820 - 10,857,693 (+)Ensemblpanpan1.1panPan2
SLC44A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12050,557,816 - 50,571,137 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2050,551,249 - 50,607,200 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,430,322 - 50,459,391 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02051,076,057 - 51,093,668 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2051,082,994 - 51,130,343 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,292,534 - 50,316,940 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,715,881 - 50,744,966 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,957,171 - 50,986,231 (-)NCBIUU_Cfam_GSD_1.0
Slc44a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118209,459,250 - 209,491,121 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936659882,221 - 895,444 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936659863,612 - 895,456 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC44A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl269,365,012 - 69,399,081 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1269,364,946 - 69,399,081 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2269,742,605 - 69,783,395 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Slc44a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248282,655,113 - 2,677,135 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248282,655,107 - 2,678,347 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC44A2
1088 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000005039   ⟹   ENSCSAP00000003268
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl69,630,113 - 9,646,389 (+)Ensembl
RefSeq Acc Id: XM_037992462   ⟹   XP_037848390
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607410,326,343 - 10,349,797 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037848390 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003268.1
Ensembl Acc Id: ENSCSAP00000003268   ⟸   ENSCSAT00000005039
RefSeq Acc Id: XP_037848390   ⟸   XM_037992462
- UniProtKB: A0A0D9R3S9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007045 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005039.1 UniProtKB/TrEMBL
InterPro Choline_transptr-like UniProtKB/TrEMBL
NCBI Gene SLC44A2 ENTREZGENE
PANTHER CHOLINE TRANSPORTER-LIKE PROTEIN 2 UniProtKB/TrEMBL
  PTHR12385 UniProtKB/TrEMBL
Pfam Choline_transpo UniProtKB/TrEMBL
UniProt A0A0D9R3S9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-11-07 SLC44A2  solute carrier family 44 member 2 (CTL2 blood group)  SLC44A2  solute carrier family 44 member 2  Symbol and/or name change 5135510 APPROVED
2020-12-03 SLC44A2  solute carrier family 44 member 2  LOC103233907  uncharacterized LOC103233907  Data merged from RGD:18588245 737654 PROVISIONAL