LOC103247147 (HLA class I histocompatibility antigen, B alpha chain-like) - Rat Genome Database

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Gene: LOC103247147 (HLA class I histocompatibility antigen, B alpha chain-like) Chlorocebus sabaeus
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Symbol: LOC103247147
Name: HLA class I histocompatibility antigen, B alpha chain-like
RGD ID: 18790674
Description: ENCODES a pseudogene that exhibits peptide antigen binding (inferred); signaling receptor binding (inferred); INVOLVED IN antigen processing and presentation (inferred); antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent (inferred); antigen processing and presentation of endogenous peptide antigen via MHC class Ib (inferred); FOUND IN cell surface (inferred); early endosome membrane (inferred); ER to Golgi transport vesicle membrane (inferred)
Type: pseudo
RefSeq Status: MODEL
Previously known as: HLA class I histocompatibility antigen, B-45 alpha chain-like
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366604431,006,053 - 31,010,253 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


References

Genomics


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005242981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_005242981
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604431,006,053 - 31,010,253 (+)NCBI
Protein Sequences
Ensembl Protein ENSCSAP00000014310.1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018299 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016398.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.30.500.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_class-I_related UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_I_a_a1/a2 UniProtKB/TrEMBL
  MHC_I_a_C UniProtKB/TrEMBL
NCBI Gene LOC103247147 ENTREZGENE
PANTHER HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, ALPHA CHAIN G UniProtKB/TrEMBL
  MHC CLASS I-RELATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_I UniProtKB/TrEMBL
  MHC_I_C UniProtKB/TrEMBL
PRINTS MHCCLASSI UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF54452 UniProtKB/TrEMBL
UniProt A0A0D9S0C1_CHLSB UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103247147  HLA class I histocompatibility antigen, B alpha chain-like  LOC103247147  HLA class I histocompatibility antigen, B-45 alpha chain-like  Symbol and/or name change 5135510 APPROVED