EXOC6 (exocyst complex component 6) - Rat Genome Database

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Gene: EXOC6 (exocyst complex component 6) Chlorocebus sabaeus
Analyze
Symbol: EXOC6
Name: exocyst complex component 6
RGD ID: 18790007
Description: INVOLVED IN erythrocyte differentiation (ortholog); PARTICIPATES IN insulin signaling pathway; FOUND IN exocyst (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1985,967,316 - 86,310,052 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl986,097,257 - 86,310,049 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604846,864,128 - 47,077,094 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
exocyst  (IEA)
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
EXOC6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1985,967,316 - 86,310,052 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl986,097,257 - 86,310,049 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604846,864,128 - 47,077,094 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
EXOC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381092,826,831 - 93,059,490 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1092,826,831 - 93,059,493 (+)EnsemblGRCh38hg38GRCh38
GRCh371094,586,588 - 94,819,247 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361094,584,450 - 94,809,241 (+)NCBINCBI36Build 36hg18NCBI36
Build 341094,598,248 - 94,809,240NCBI
Celera1088,335,925 - 88,560,454 (+)NCBICelera
Cytogenetic Map10q23.33NCBI
HuRef1088,221,556 - 88,446,771 (+)NCBIHuRef
CHM1_11094,877,294 - 95,101,961 (+)NCBICHM1_1
T2T-CHM13v2.01093,706,495 - 93,939,384 (+)NCBIT2T-CHM13v2.0
Exoc6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391937,525,181 - 37,672,499 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1937,509,327 - 37,672,507 (+)EnsemblGRCm39 Ensembl
GRCm381937,536,763 - 37,684,052 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1937,520,879 - 37,684,059 (+)EnsemblGRCm38mm10GRCm38
MGSCv371937,624,908 - 37,757,743 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361937,615,562 - 37,748,397 (+)NCBIMGSCv36mm8
Celera1938,347,853 - 38,470,250 (+)NCBICelera
Cytogenetic Map19C2NCBI
cM Map1932.32NCBI
Exoc6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81244,727,084 - 244,870,263 (+)NCBIGRCr8
mRatBN7.21235,314,612 - 235,457,824 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1235,300,369 - 235,457,015 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1243,699,707 - 243,842,113 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01250,631,902 - 250,774,276 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01243,470,086 - 243,612,479 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01256,211,879 - 256,369,318 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1256,226,179 - 256,368,813 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01263,708,969 - 263,850,916 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41241,964,047 - 242,008,416 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1232,405,767 - 232,549,626 (+)NCBICelera
Cytogenetic Map1q53NCBI
Exoc6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955425389,940 - 601,304 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955425389,940 - 560,683 (-)NCBIChiLan1.0ChiLan1.0
EXOC6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28104,837,864 - 105,095,441 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110104,843,171 - 105,100,759 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01089,569,961 - 89,803,658 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11093,060,721 - 93,316,030 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1093,088,914 - 93,316,030 (+)Ensemblpanpan1.1panPan2
EXOC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1287,190,918 - 7,414,367 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl287,207,194 - 7,414,362 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha287,383,691 - 7,590,914 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0287,450,430 - 7,674,414 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl287,443,006 - 7,674,405 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1287,187,448 - 7,394,618 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0287,222,047 - 7,431,904 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0287,386,421 - 7,593,646 (+)NCBIUU_Cfam_GSD_1.0
Exoc6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721340,201,688 - 40,392,331 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366011,831,165 - 1,975,872 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366011,835,469 - 1,976,735 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXOC6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14104,326,827 - 104,549,636 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114104,326,943 - 104,549,638 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Exoc6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247374,055,685 - 4,310,478 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247374,043,672 - 4,311,147 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EXOC6
7194 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000004574   ⟹   ENSCSAP00000002820
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl986,097,257 - 86,310,049 (+)Ensembl
RefSeq Acc Id: XM_007963570   ⟹   XP_007961761
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1986,114,076 - 86,310,048 (+)NCBI
Vero_WHO_p1.0NW_02366604846,881,362 - 47,077,094 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007963571   ⟹   XP_007961762
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1986,114,072 - 86,233,709 (+)NCBI
Vero_WHO_p1.0NW_02366604846,881,362 - 47,000,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007963577   ⟹   XP_007961768
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1986,097,384 - 86,310,052 (+)NCBI
Vero_WHO_p1.0NW_02366604846,864,128 - 47,077,085 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007963579   ⟹   XP_007961770
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1986,114,531 - 86,310,052 (+)NCBI
Vero_WHO_p1.0NW_02366604846,881,349 - 47,077,085 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007963581   ⟹   XP_007961772
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1986,114,678 - 86,310,048 (+)NCBI
Vero_WHO_p1.0NW_02366604846,881,420 - 47,077,085 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007963583   ⟹   XP_007961774
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1986,114,699 - 86,310,048 (+)NCBI
Vero_WHO_p1.0NW_02366604846,881,418 - 47,077,085 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038009264   ⟹   XP_037865192
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604846,881,528 - 47,077,085 (+)NCBI
RefSeq Acc Id: XP_007961768   ⟸   XM_007963577
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R2I1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007961762   ⟸   XM_007963571
- Peptide Label: isoform X5
RefSeq Acc Id: XP_007961761   ⟸   XM_007963570
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R2I1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007961770   ⟸   XM_007963579
- Peptide Label: isoform X3
- UniProtKB: A0A0D9R2I1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007961772   ⟸   XM_007963581
- Peptide Label: isoform X4
- UniProtKB: A0A0D9R2I1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007961774   ⟸   XM_007963583
- Peptide Label: isoform X4
- UniProtKB: A0A0D9R2I1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000002820   ⟸   ENSCSAT00000004574
RefSeq Acc Id: XP_037865192   ⟸   XM_038009264
- Peptide Label: isoform X4
- UniProtKB: A0A0D9R2I1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006536 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004574.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.357.30 UniProtKB/TrEMBL
  1.20.58.670 UniProtKB/TrEMBL
InterPro EXOC6/Sec15 UniProtKB/TrEMBL
  EXOC6/Sec15_C_dom1 UniProtKB/TrEMBL
  EXOC6/Sec15_C_dom2 UniProtKB/TrEMBL
  EXOC6_Sec15_N UniProtKB/TrEMBL
  Sec15_C UniProtKB/TrEMBL
NCBI Gene EXOC6 ENTREZGENE
PANTHER EXOCYST COMPLEX COMPONENT 6 UniProtKB/TrEMBL
  PTHR12702 UniProtKB/TrEMBL
Pfam EXOC6_Sec15_N UniProtKB/TrEMBL
  Sec15 UniProtKB/TrEMBL
PIRSF Sec15 UniProtKB/TrEMBL
UniProt A0A0D9R2I1 ENTREZGENE, UniProtKB/TrEMBL