ANK1 (ankyrin 1) - Rat Genome Database

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Gene: ANK1 (ankyrin 1) Chlorocebus sabaeus
Analyze
Symbol: ANK1
Name: ankyrin 1
RGD ID: 18750943
Description: ENCODES a protein that exhibits ATPase binding (inferred); cytoskeletal anchor activity (inferred); enzyme binding (inferred); INVOLVED IN erythrocyte development (ortholog); inorganic cation transmembrane transport (ortholog); multicellular organismal-level iron ion homeostasis (ortholog); ASSOCIATED WITH anemia (ortholog); bone development disease (ortholog); genetic disease (ortholog); FOUND IN A band (ortholog); axolemma (ortholog); cortical cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1839,627,766 - 39,871,329 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl839,626,981 - 39,871,151 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660521,919,618 - 2,190,241 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ANK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1839,627,766 - 39,871,329 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl839,626,981 - 39,871,151 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660521,919,618 - 2,190,241 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ANK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38841,653,225 - 41,896,741 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl841,653,220 - 41,896,741 (-)EnsemblGRCh38hg38GRCh38
GRCh37841,510,744 - 41,754,259 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36841,629,901 - 41,774,297 (-)NCBINCBI36Build 36hg18NCBI36
Build 34841,632,000 - 41,641,949NCBI
Celera840,459,268 - 40,702,528 (-)NCBICelera
Cytogenetic Map8p11.21NCBI
HuRef840,038,471 - 40,281,660 (-)NCBIHuRef
CHM1_1841,558,937 - 41,802,421 (-)NCBICHM1_1
T2T-CHM13v2.0841,926,848 - 42,170,259 (-)NCBIT2T-CHM13v2.0
Ank1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39823,464,852 - 23,640,517 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl823,464,860 - 23,640,513 (+)EnsemblGRCm39 Ensembl
GRCm38822,974,836 - 23,150,501 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl822,974,844 - 23,150,497 (+)EnsemblGRCm38mm10GRCm38
MGSCv37824,085,354 - 24,260,968 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36824,523,820 - 24,616,041 (+)NCBIMGSCv36mm8
Celera824,465,487 - 24,646,749 (+)NCBICelera
Cytogenetic Map8A2NCBI
cM Map811.42NCBI
Ank1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81675,578,824 - 75,757,464 (-)NCBIGRCr8
mRatBN7.21668,876,294 - 69,054,963 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1668,877,504 - 69,054,759 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1674,153,929 - 74,328,599 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01677,581,598 - 77,760,634 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01672,830,782 - 73,009,777 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01673,681,422 - 73,912,605 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1673,681,422 - 73,827,488 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01673,397,821 - 73,459,822 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01673,314,002 - 73,331,197 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41673,333,564 - 73,437,926 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11673,333,832 - 73,438,435 (-)NCBI
Celera1666,776,909 - 66,863,441 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
Ank1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555361,049,407 - 1,237,943 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555361,049,325 - 1,237,943 (+)NCBIChiLan1.0ChiLan1.0
ANK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2760,107,644 - 60,348,473 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1835,823,073 - 36,065,663 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0840,897,879 - 41,140,290 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1838,346,503 - 38,588,620 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl838,346,503 - 38,588,549 (-)Ensemblpanpan1.1panPan2
ANK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11623,858,299 - 23,966,181 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1623,766,193 - 23,964,226 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1624,254,185 - 24,469,762 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01625,498,990 - 25,712,885 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1625,499,092 - 25,712,882 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11623,869,170 - 24,084,432 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01624,430,879 - 24,646,688 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01624,481,503 - 24,697,954 (+)NCBIUU_Cfam_GSD_1.0
Ank1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494346,781,927 - 46,988,338 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936785738,317 - 942,381 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936785738,323 - 944,734 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1710,751,609 - 10,985,191 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11710,752,258 - 10,985,129 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21712,184,513 - 12,419,119 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ank1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247801,429,403 - 1,617,743 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247801,429,415 - 1,619,010 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ANK1
7617 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007962288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007962312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037983538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000013163   ⟹   ENSCSAP00000011173
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl839,626,981 - 39,871,151 (-)Ensembl
RefSeq Acc Id: XM_007962288   ⟹   XP_007960479
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1839,627,766 - 39,871,320 (-)NCBI
Vero_WHO_p1.0NW_0236660521,919,628 - 2,188,153 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007962289   ⟹   XP_007960480
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1839,627,766 - 39,871,320 (-)NCBI
Vero_WHO_p1.0NW_0236660521,919,628 - 2,188,153 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007962291   ⟹   XP_007960482
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1839,627,766 - 39,871,319 (-)NCBI
Vero_WHO_p1.0NW_0236660521,919,628 - 2,188,153 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007962292   ⟹   XP_007960483
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1839,627,766 - 39,871,319 (-)NCBI
Vero_WHO_p1.0NW_0236660521,919,628 - 2,190,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007962294   ⟹   XP_007960485
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1839,627,766 - 39,871,320 (-)NCBI
Vero_WHO_p1.0NW_0236660521,919,628 - 2,190,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007962295   ⟹   XP_007960486
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1839,627,766 - 39,744,332 (-)NCBI
Vero_WHO_p1.0NW_0236660522,046,662 - 2,188,153 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007962296   ⟹   XP_007960487
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1839,627,766 - 39,871,318 (-)NCBI
Vero_WHO_p1.0NW_0236660521,919,628 - 2,190,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007962298   ⟹   XP_007960489
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1839,627,766 - 39,871,320 (-)NCBI
Vero_WHO_p1.0NW_0236660521,919,628 - 2,190,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007962299   ⟹   XP_007960490
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1839,627,766 - 39,871,329 (-)NCBI
Vero_WHO_p1.0NW_0236660521,919,618 - 2,190,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007962300   ⟹   XP_007960491
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1839,627,766 - 39,871,319 (-)NCBI
Vero_WHO_p1.0NW_0236660521,919,628 - 2,190,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007962305   ⟹   XP_007960496
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1839,627,766 - 39,871,320 (-)NCBI
Vero_WHO_p1.0NW_0236660521,919,628 - 2,188,153 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007962307   ⟹   XP_007960498
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1839,627,766 - 39,871,321 (-)NCBI
Vero_WHO_p1.0NW_0236660521,919,628 - 2,190,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007962308   ⟹   XP_007960499
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1839,627,766 - 39,871,319 (-)NCBI
Vero_WHO_p1.0NW_0236660521,919,628 - 2,190,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007962310   ⟹   XP_007960501
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1839,627,766 - 39,640,641 (-)NCBI
Vero_WHO_p1.0NW_0236660522,175,189 - 2,190,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007962311   ⟹   XP_007960502
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1839,627,769 - 39,640,641 (-)NCBI
Vero_WHO_p1.0NW_0236660522,175,185 - 2,190,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037983538   ⟹   XP_037839466
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660521,919,628 - 2,190,241 (+)NCBI
RefSeq Acc Id: XP_007960490   ⟸   XM_007962299
- Peptide Label: isoform X9
RefSeq Acc Id: XP_007960498   ⟸   XM_007962307
- Peptide Label: isoform X12
RefSeq Acc Id: XP_007960496   ⟸   XM_007962305
- Peptide Label: isoform X11
RefSeq Acc Id: XP_007960489   ⟸   XM_007962298
- Peptide Label: isoform X8
RefSeq Acc Id: XP_007960480   ⟸   XM_007962289
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007960485   ⟸   XM_007962294
- Peptide Label: isoform X5
RefSeq Acc Id: XP_007960479   ⟸   XM_007962288
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007960499   ⟸   XM_007962308
- Peptide Label: isoform X13
RefSeq Acc Id: XP_007960491   ⟸   XM_007962300
- Peptide Label: isoform X10
RefSeq Acc Id: XP_007960482   ⟸   XM_007962291
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007960483   ⟸   XM_007962292
- Peptide Label: isoform X4
RefSeq Acc Id: XP_007960487   ⟸   XM_007962296
- Peptide Label: isoform X7
RefSeq Acc Id: XP_007960486   ⟸   XM_007962295
- Peptide Label: isoform X6
RefSeq Acc Id: XP_007960501   ⟸   XM_007962310
- Peptide Label: isoform X15
RefSeq Acc Id: XP_007960502   ⟸   XM_007962311
- Peptide Label: isoform X16
Ensembl Acc Id: ENSCSAP00000011173   ⟸   ENSCSAT00000013163
RefSeq Acc Id: XP_037839466   ⟸   XM_037983538
- Peptide Label: isoform X14


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015073 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013163.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
  2.60.220.30 UniProtKB/TrEMBL
  2.60.40.2660 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  Ankyrin_UPA UniProtKB/TrEMBL
  DEATH-like_dom_sf UniProtKB/TrEMBL
  Death_domain UniProtKB/TrEMBL
  ZU5_dom UniProtKB/TrEMBL
NCBI Gene ANK1 ENTREZGENE
PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ANKYRIN-3 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  Ank_3 UniProtKB/TrEMBL
  Death UniProtKB/TrEMBL
  UPA_2 UniProtKB/TrEMBL
  ZU5 UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  DEATH_DOMAIN UniProtKB/TrEMBL
  ZU5 UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  DEATH UniProtKB/TrEMBL
  ZU5 UniProtKB/TrEMBL
Superfamily-SCOP SSF47986 UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
UniProt A0A0D9RRD4_CHLSB UniProtKB/TrEMBL