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Gene: NELFA (negative elongation factor complex member A) Chlorocebus sabaeus

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Symbol:

NELFA

Name:

negative elongation factor complex member A

RGD ID:

18739489

Description:

ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN negative regulation of transcription elongation by RNA polymerase II (ortholog); positive regulation of protein modification process (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; ASSOCIATED WITH cherubism (ortholog); FOUND IN cytosol (inferred); NELF complex (inferred); nuclear body (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

negative elongation factor A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	46,759,742 - 46,786,835 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	46,760,707 - 46,787,090 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	3,131,850 - 3,158,957 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cherubism (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of transcription elongation by RNA polymerase II (IEA,ISO)

positive regulation of protein modification process (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

Cellular Component

cytosol (IEA)

NELF complex (IEA)

nuclear body (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

chromatin binding (IEA,ISO)

molecular adaptor activity (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription elongation pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

NELFA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	46,759,742 - 46,786,835 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	46,760,707 - 46,787,090 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	3,131,850 - 3,158,957 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

NELFA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	1,982,723 - 2,008,974 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	1,982,717 - 2,041,903 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	1,984,450 - 2,010,701 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	1,954,248 - 1,980,547 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	1,951,683 - 1,977,980	NCBI
Celera	4	1,896,671 - 1,923,194 (-)	NCBI		Celera
Cytogenetic Map	4	p16.3	NCBI
HuRef	4	1,925,800 - 1,952,332 (-)	NCBI		HuRef
CHM1_1	4	1,983,104 - 2,009,627 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	1,981,232 - 2,007,492 (-)	NCBI		T2T-CHM13v2.0

Nelfa
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	34,055,263 - 34,093,615 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	34,055,260 - 34,093,757 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	33,897,916 - 33,936,301 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	33,897,916 - 33,936,413 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	34,240,828 - 34,278,907 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	34,215,036 - 34,253,115 (-)	NCBI		MGSCv36	mm8
Celera	5	31,375,430 - 31,405,361 (-)	NCBI		Celera
Cytogenetic Map	5	B2	NCBI
cM Map	5	17.83	NCBI

Nelfa
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	81,033,470 - 81,057,546 (+)	NCBI		GRCr8
mRatBN7.2	14	76,808,920 - 76,832,998 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	76,808,870 - 76,832,994 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	81,260,792 - 81,284,853 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	82,501,435 - 82,525,496 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	78,946,688 - 78,970,749 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	82,093,837 - 82,117,913 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	82,093,837 - 82,117,906 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	82,778,077 - 82,802,153 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	82,502,840 - 82,526,916 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	82,505,230 - 82,529,304 (+)	NCBI
Celera	14	75,732,469 - 75,756,545 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

Nelfa
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955514	1,162,993 - 1,173,278 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955514	1,162,993 - 1,173,278 (-)	NCBI	ChiLan1.0	ChiLan1.0

NELFA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	2,310,013 - 2,374,814 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	2,247,052 - 2,311,265 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	2,119,699 - 2,147,618 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	2,027,939 - 2,054,669 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	2,027,939 - 2,054,669 (-)	Ensembl	panpan1.1		panPan2

NELFA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	62,147,948 - 62,164,039 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	62,147,948 - 62,164,112 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	64,665,674 - 64,682,273 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	62,623,281 - 62,639,884 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	62,623,336 - 62,639,877 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	62,115,860 - 62,133,779 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	62,319,512 - 62,337,145 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	62,679,577 - 62,696,178 (+)	NCBI		UU_Cfam_GSD_1.0

Nelfa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	67,740,863 - 67,758,307 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936477	21,442,380 - 21,464,005 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936477	21,442,493 - 21,459,999 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NELFA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	1,018,453 - 1,039,134 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	1,018,443 - 1,039,091 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	515,274 - 626,779 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Nelfa
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624755	25,498,431 - 25,508,753 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624755	25,498,336 - 25,508,753 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in NELFA
521 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008018126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000013764 ⟹ ENSCSAP00000011753

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	27	46,760,707 - 46,787,090 (+)	Ensembl

RefSeq Acc Id:

XM_008018126 ⟹ XP_008016317

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	27	46,759,742 - 46,786,835 (+)	NCBI
Vero_WHO_p1.0	NW_023666051	3,131,850 - 3,158,957 (+)	NCBI

Sequence:

show sequence

GACTTCCGCAGGACTGCCAAGTTCAAGCCGCCAAGGCCAGGGCACTGCCAGCAGCTGGGCTGAG
CCCTGTTCTCCCTGCGTTCCCACTGCCCAGTGGCAACAGCTGTGAACGGCGGCAGGCTCATAGC
AGTGGAAGAACAAGGAAAAGACCTTTTAAAAAAAGATACTATAATACAGAAGCTAGGCAAGGCG
GCCCCGGCCTGTAACCCCAGCACTCTGGGAAGCAGAGGCGGGCGGGCGGATCGCTTGAGCCCAG
GAGTTTGAGACCAGCCTGGCCAACATAGAAAGGCCTCGTCAAAAAGACAAAAGAGTAAAATGAA
TTTAATAAAATGAGGTTCAACTTTTACTCATGTTTGTACCTAATGACAAGCTCGTAAAACTGAA
AAGTTCACTATTGGCTCCTGCCCATAGGCTCCAGGCCGAGTAGGGGCCGGGGCCTCCCTGCACT
GCGGGGTCACGGGTGCCCCGGGACCACTCCCCGAGCGCCCTCCGACCCGCATGCTCAGCGCAGC
TCCGTTGGCAGCGCGCCACGGGCAGAGCGGGTTCAGCGGGGAACGGAAGCTCAGCGCGGAGACT
GGGATCCCGCAGGCTCACTCCGCAGGGCCGCGGCTCCTCTCTGTGCAGGTGCTGGGCCCGCAGG
GGCGGGCGACGAGGTCCGCGCCGAGACCCAAGCGGGGAGAAAGCGAAGAGCGGAGGACGGGGCA
GGCGCACCGGGAACCTCCGCCCCTACGCACGAGCCGAGAGTGCGGCGCTTGACACCTGCACTGC
AAACGCCAGGCCGCATCCCGAGCTCCCAAGCCGCGAATACGCGCGCCCGCTCGTGACGTCATCT
TTTGCGGTCTCCCCGAGAGTCGGCAGCGGGCGCCGCCATGATGCGTTACGGAAGCCGATAGTTC
TTGCCCGGCGTCACCCCGTCGTTCCGGCTCTCGACGTTGCCACAGAGCTTCCGAGAGACGCGGC
CGCCACCCAGAAGCGCTCTCGTTGGAAGCCCCGCTCGTGGGGCCCTGCTGCCTGCGCCGCCTCT
GCCGCCCGCAGCCCGACGGGCGCCGCCATGTTGGGGTCCTAGCCGGGGGCGTGTAGGTGTCTTC
ATAAGATGCCGGGGCTGCGGCGCGCGCTTTCCCCCAAGATGGCGTCCATGCGGGAGAGCGACAC
GGGCCTGTGGCTGCACAACAAGCTGGGGGCCACGGACGAACTGTGGGCGCCGCCCAGCATCGCG
TCCCTGCTGACGGCCGCGGTCATCGACAACATCCGTCTCTGCTTCCATGGCCTCTCTTCGGCGG
TGAAGCTCAAGTTGCTACTGGGGACGCTGCACCTCCCGCGCCGCACGGTGGACGAGATGAAGGG
CGCCCTGGTGGAGATCATCCAGCTCGCCAGCCTCGACTCGGACCCCTGGGTGCTCATGGTCGCC
GACATCCTGAAGTCCTTTCCAGACACGGGCTCACTTAACCTGGAGCTCGAGGAGCAGAATCCCA
ATGTTCAGGATATTTTGGGAGAACTTAGAGAAAAGGTGGGCGAGTGTGAAGCGTCTGCCATGCT
GCCACTGGAGTGCCAGTACTTGAACAAAAACGCCCTGACAACCCTCGCGGGACCCCTCACGCCG
CCGGTGAAGCATTTTCAGTTGAAGCGGAAACCCAAGAGCGCCACGCTGCGGGCGGAGCTGCTGC
AGAAGTCCACGGAGACCGCCCAGCAGCTGAAGCGGAGCGCCGGGGTGCCCTTCCACGCCAAGGG
CCGGGGGCTGCTGCGGAAGATGGACACCACCACCCCACTCAAAGGCATCCCGAAGCAGGCACCC
TTCAGAAGCCCCACGGCGCCCAGTGTCTTCAGCCCCACGGGGAACCGGACCCCCATCCCGCCTT
CCAGGACGCTGCTGAGGAAAGAACGGGGTGTGAAGCTGCTGGACATCTCTGAGCTGGATATGGT
CGGTGCTGGCCGAGAGGCGAAGAGGAGAAGGAAGACTCTCGATGCGGAGGTGGTGGAGAAGCCA
GCCAAGGAGGAAACCGTGGTGGAGAACGCCACCCCGGACTATGCGGCCGGCCTGGTGTCCACAC
AGAAACTTGGGTCCCTGAACAGTGAGCCTGCGCTGCCCTCCACGAGCTACCTTCCCTCCACGCC
CAGCGTGGTTCCCGCCTCCTCCTACATCCCCAGCTCCGAGACGCCCCCAGCCCCCTCCTCCCGA
GAAGCCAGCCGCCCACCAGAGGAGCCCAGCACCCCGAGCCCTACGCTGCCAGCGCAGTTCAAGC
AGCGGGCACCCATGTACAACAGCGGCCTGAGCCCTGCCACACCCACGCCTGCAGCGCCCACCTC
GCCTCTGACACCCACCACACCTCCGGCTGTCGCTCCTACCACTCAGACACCCCCGGTTGCCATG
GTGGCCCCACAGACCCAGGCCTCTGCCCAGCAGCAGCCTAAGAAGAACCTGTCCCTCACGAGAG
AGCAGATGTTCGCTGCCCAGGAGATGTTCAAGACAGCCAACAAAGTGACACGGCCCGAGAAGGC
CCTCATCCTGGGCTTCATGGCCGGCTCCCGAGAGAACCCATGCCAGGAGCAGGGGGACGTGATC
CAGATCAAGCTGAGCGAGCACACGGAGGACCTGCCCAAGGCGGATGGCCAGGGCAGCACCACCA
TGCTGGTGGACACAGTGTTCGAGATGAACTACGCCACGGGTCAGTGGACACGCTTCAAGAAGTA
CAAGCCCATGACCAACGTGTCCTAGGGCCACCTGCCTCACAGCTGGCCCTCACTTGGGGGCTCC
AAGGGACGATGGCTTTGCCGGCTTAAATTAACCAGACAGCGGACACCTGGCCCACGAGGTCCCC
CAGCCACCGCCCTGCTGCTGACCCAGCCTGTTTTAAGTTCTGGATGCATTTCTCTGGGGTGTTT
TGGGCTTATTTTTAAAATTTTAATATGGGTTCCTTTTTGTGTGATTTAAGACACTTTTTGGACT
CAACGTTCCATTTTTGAATGTAGTAAATTAACCAAAAAAGTTACAACTTCCTAATTTTAGTGAC
AGCTCTGCCTGTTAGACTCTTACTTTTTAAAATCTTTTCTATTTTCCTCGCTGGGGCAGTGCCC
TTGGCACGGTGGTACTGGGGGTGGGGCAGGGACACCTGACCACACCAGAGTGTGGGAGACGGCA
GGCCTTGTCCCCTGCCAGTGCCTGCCTGGGAGTTTTGTATTCATCTTTTGTACAGTCGTGGACA
TTTAAGACAGTATTTGGGTACCTATTTTCATTGTAAAACTATCTGAACCATTAAAGTTTAGCTT
TTCTAAAGAAAGCCACCATGGCTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008016317	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000011753
	ENSCSAP00000011753.1

RefSeq Acc Id:	XP_008016317 ⟸ XM_008018126
- UniProtKB:	A0A0D9RT14 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000011753 ⟸ ENSCSAT00000013764

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000015669	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000013764.1	UniProtKB/TrEMBL
InterPro	HDAG_dom	UniProtKB/TrEMBL
	NELF-A_domain	UniProtKB/TrEMBL
KEGG Report	csab:103246475	UniProtKB/TrEMBL
NCBI Gene	NELFA	ENTREZGENE
PANTHER	NEGATIVE ELONGATION FACTOR A	UniProtKB/TrEMBL
	NEGATIVE ELONGATION FACTOR A NELF-A	UniProtKB/TrEMBL
PROSITE	HDAG	UniProtKB/TrEMBL
UniProt	A0A0D9RT14	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations