SPTBN2 (spectrin beta, non-erythrocytic 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: SPTBN2 (spectrin beta, non-erythrocytic 2) Chlorocebus sabaeus
Analyze
Symbol: SPTBN2
Name: spectrin beta, non-erythrocytic 2
RGD ID: 18729427
Description: ENCODES a protein that exhibits actin binding (inferred); phospholipid binding (inferred); structural constituent of cytoskeleton (inferred); INVOLVED IN adult behavior (ortholog); cellular response to ethanol (ortholog); cerebellar Purkinje cell layer morphogenesis (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal dominant cerebellar ataxia (ortholog); autosomal recessive cerebellar ataxia (ortholog); FOUND IN endosome (ortholog); glutamatergic synapse (ortholog); Golgi membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spectrin beta chain, non-erythrocytic 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,543,035 - 7,588,125 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,556,953 - 7,590,720 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038104,830,187 - 104,874,969 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SPTBN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,543,035 - 7,588,125 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,556,953 - 7,590,720 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038104,830,187 - 104,874,969 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SPTBN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,682,497 - 66,744,682 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,682,496 - 66,744,670 (-)EnsemblGRCh38hg38GRCh38
GRCh371166,449,968 - 66,496,687 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361166,209,299 - 66,245,446 (-)NCBINCBI36Build 36hg18NCBI36
Build 341166,209,298 - 66,245,446NCBI
Celera1163,779,325 - 63,815,933 (-)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1162,780,849 - 62,816,939 (-)NCBIHuRef
CHM1_11166,336,472 - 66,372,624 (-)NCBICHM1_1
T2T-CHM13v2.01166,678,745 - 66,725,466 (-)NCBIT2T-CHM13v2.0
Sptbn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39194,761,236 - 4,804,006 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl194,761,195 - 4,802,388 (+)EnsemblGRCm39 Ensembl
GRCm38194,711,208 - 4,753,978 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,711,167 - 4,752,360 (+)EnsemblGRCm38mm10GRCm38
MGSCv37194,711,223 - 4,752,352 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36194,711,223 - 4,752,352 (+)NCBIMGSCv36mm8
Celera194,582,341 - 4,623,299 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.1NCBI
Sptbn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,432,373 - 211,473,016 (+)NCBIGRCr8
mRatBN7.21202,002,970 - 202,045,343 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,002,970 - 202,044,283 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,356,032 - 210,396,701 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,448,385 - 217,489,036 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,139,403 - 210,180,054 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,964,429 - 220,006,811 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,964,429 - 220,005,068 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,828,798 - 226,870,783 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,318,258 - 207,358,896 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11207,471,710 - 207,512,349 (+)NCBI
Celera1199,543,481 - 199,584,122 (+)NCBICelera
Cytogenetic Map1q43NCBI
Sptbn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542218,659,489 - 18,699,338 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542218,659,489 - 18,699,338 (+)NCBIChiLan1.0ChiLan1.0
SPTBN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,911,052 - 67,955,088 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,953,825 - 68,997,850 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01162,042,617 - 62,086,634 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11165,365,588 - 65,409,207 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1165,365,588 - 65,409,207 (-)Ensemblpanpan1.1panPan2
SPTBN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,631,053 - 50,670,428 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,631,909 - 50,669,916 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,240,573 - 49,279,278 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01851,662,893 - 51,701,379 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1851,662,852 - 51,701,369 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11850,774,519 - 50,803,374 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,344,628 - 50,383,072 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,134,515 - 51,173,008 (+)NCBIUU_Cfam_GSD_1.0
Sptbn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,448,050 - 6,486,151 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365992,890,817 - 2,928,499 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365992,890,404 - 2,928,502 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPTBN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,695,836 - 5,739,415 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.125,683,414 - 5,739,418 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sptbn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476719,694,241 - 19,734,650 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476719,694,471 - 19,734,653 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SPTBN2
753 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 18 34 34 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000006422   ⟹   ENSCSAP00000004626
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl17,556,953 - 7,590,720 (+)Ensembl
RefSeq Acc Id: XM_037999012   ⟹   XP_037854940
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038104,839,232 - 104,874,969 (+)NCBI
RefSeq Acc Id: XM_037999013   ⟹   XP_037854941
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038104,839,232 - 104,874,969 (+)NCBI
RefSeq Acc Id: XM_037999014   ⟹   XP_037854942
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038104,836,473 - 104,873,186 (+)NCBI
RefSeq Acc Id: XM_037999015   ⟹   XP_037854943
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038104,830,202 - 104,873,186 (+)NCBI
RefSeq Acc Id: XM_037999016   ⟹   XP_037854944
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038104,830,187 - 104,872,570 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037854940 (Get FASTA)   NCBI Sequence Viewer  
  XP_037854941 (Get FASTA)   NCBI Sequence Viewer  
  XP_037854942 (Get FASTA)   NCBI Sequence Viewer  
  XP_037854943 (Get FASTA)   NCBI Sequence Viewer  
  XP_037854944 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004626.1
Ensembl Acc Id: ENSCSAP00000004626   ⟸   ENSCSAT00000006422
RefSeq Acc Id: XP_037854944   ⟸   XM_037999016
- Peptide Label: isoform X3
- UniProtKB: A0A0D9R7N7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037854943   ⟸   XM_037999015
- Peptide Label: isoform X3
- UniProtKB: A0A0D9R7N7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037854942   ⟸   XM_037999014
- Peptide Label: isoform X3
- UniProtKB: A0A0D9R7N7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037854940   ⟸   XM_037999012
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R7N7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037854941   ⟸   XM_037999013
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R7N7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008375 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006422.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  1.20.58.60 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_9 UniProtKB/TrEMBL
  PH_dom-spectrin-type UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  Spectrin/alpha-actinin UniProtKB/TrEMBL
  Spectrin_bsu UniProtKB/TrEMBL
  Spectrin_repeat UniProtKB/TrEMBL
NCBI Gene SPTBN2 ENTREZGENE
PANTHER SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN UniProtKB/TrEMBL
Pfam PF00307 UniProtKB/TrEMBL
  PH_9 UniProtKB/TrEMBL
  Spectrin UniProtKB/TrEMBL
PIRSF Spectrin_beta_subunit UniProtKB/TrEMBL
PRINTS SPECTRINPH UniProtKB/TrEMBL
PROSITE PH_DOMAIN UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
SMART SM00033 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
  SPEC UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  Spectrin repeat UniProtKB/TrEMBL
  SSF47576 UniProtKB/TrEMBL
UniProt A0A0D9R7N7 ENTREZGENE, UniProtKB/TrEMBL