SUPT16H (SPT16 homolog, facilitates chromatin remodeling subunit) - Rat Genome Database

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Gene: SUPT16H (SPT16 homolog, facilitates chromatin remodeling subunit) Chlorocebus sabaeus
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Symbol: SUPT16H
Name: SPT16 homolog, facilitates chromatin remodeling subunit
RGD ID: 18709946
Description: ENCODES a protein that exhibits nucleosome binding (inferred); INVOLVED IN DNA damage response (inferred); DNA repair (inferred); DNA replication (inferred); PARTICIPATES IN histone modification pathway; RNA polymerase I transcription pathway; RNA polymerase II transcription elongation pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); cone-rod dystrophy 13 (ortholog); dextrocardia (ortholog); FOUND IN chromosome (inferred); FACT complex (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FACT complex subunit SPT16
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12921,822,520 - 21,855,552 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2921,822,393 - 21,855,923 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605924,575,299 - 24,608,045 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)
FACT complex  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SUPT16H
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12921,822,520 - 21,855,552 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2921,822,393 - 21,855,923 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605924,575,299 - 24,608,045 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SUPT16H
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381421,351,476 - 21,384,019 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1421,351,476 - 21,384,019 (-)EnsemblGRCh38hg38GRCh38
GRCh371421,819,635 - 21,852,178 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361420,889,475 - 20,922,265 (-)NCBINCBI36Build 36hg18NCBI36
Build 341420,889,477 - 20,922,265NCBI
Celera141,685,113 - 1,717,921 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef141,939,467 - 1,972,279 (-)NCBIHuRef
CHM1_11421,821,298 - 21,854,094 (-)NCBICHM1_1
T2T-CHM13v2.01415,548,935 - 15,581,495 (-)NCBIT2T-CHM13v2.0
Supt16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391452,397,876 - 52,434,696 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1452,397,871 - 52,434,873 (-)EnsemblGRCm39 Ensembl
GRCm381452,160,419 - 52,197,239 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1452,160,414 - 52,197,416 (-)EnsemblGRCm38mm10GRCm38
MGSCv371452,780,094 - 52,816,914 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361451,082,370 - 51,119,152 (-)NCBIMGSCv36mm8
Celera1449,144,174 - 49,181,205 (-)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1426.83NCBI
Supt16h
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81527,341,196 - 27,378,314 (-)NCBIGRCr8
mRatBN7.21524,867,697 - 24,904,818 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,866,489 - 24,904,846 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1527,639,907 - 27,677,046 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01528,594,508 - 28,631,626 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01526,847,446 - 26,884,565 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01528,574,841 - 28,611,959 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1528,575,480 - 28,611,946 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01532,385,107 - 32,422,226 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41527,604,676 - 27,641,794 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11527,620,377 - 27,657,927 (-)NCBI
Celera1525,171,514 - 25,208,618 (-)NCBICelera
Cytogenetic Map15p14NCBI
Supt16h
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555502,074,941 - 2,114,528 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555502,074,646 - 2,114,634 (-)NCBIChiLan1.0ChiLan1.0
SUPT16H
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21522,806,792 - 22,840,192 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11422,023,279 - 22,056,679 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0142,169,169 - 2,201,911 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11420,247,321 - 20,280,074 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1420,247,325 - 20,280,074 (-)Ensemblpanpan1.1panPan2
SUPT16H
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11518,387,624 - 18,429,553 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1518,388,512 - 18,429,553 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1518,871,946 - 18,914,215 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01518,646,417 - 18,688,404 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1518,646,415 - 18,688,499 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11518,328,676 - 18,370,778 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01518,384,688 - 18,426,630 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01518,513,507 - 18,555,450 (-)NCBIUU_Cfam_GSD_1.0
Supt16h
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864032,602,319 - 32,635,984 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936880508,244 - 545,369 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936880511,699 - 545,364 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUPT16H
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl777,781,316 - 77,814,505 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1777,780,968 - 77,814,519 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2783,173,111 - 83,206,010 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Supt16h
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248257,367,325 - 7,410,823 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248257,366,448 - 7,410,847 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SUPT16H
776 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007990748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000014594   ⟹   ENSCSAP00000012562
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2921,822,393 - 21,855,923 (-)Ensembl
RefSeq Acc Id: XM_007990748   ⟹   XP_007988939
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12921,822,520 - 21,855,552 (-)NCBI
Vero_WHO_p1.0NW_02366605924,575,299 - 24,608,045 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007988939 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012562
  ENSCSAP00000012562.1
RefSeq Acc Id: XP_007988939   ⟸   XM_007990748
- UniProtKB: A0A0D9RVC3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000012562   ⟸   ENSCSAT00000014594


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016497 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014594.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.150 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  3.40.350.10 UniProtKB/TrEMBL
  3.90.230.10 UniProtKB/TrEMBL
  FACT complex subunit Spt16p/Cdc68p UniProtKB/TrEMBL
InterPro Creatin/AminoP/Spt16_NTD UniProtKB/TrEMBL
  Creatinase/aminopeptidase-like UniProtKB/TrEMBL
  DUF1747 UniProtKB/TrEMBL
  FACT-Spt16_Nlobe UniProtKB/TrEMBL
  FACT_Spt16 UniProtKB/TrEMBL
  Pept_M24 UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Spt16 UniProtKB/TrEMBL
  SPT16_C UniProtKB/TrEMBL
  Spt16_M24 UniProtKB/TrEMBL
KEGG Report csab:103231387 UniProtKB/TrEMBL
NCBI Gene SUPT16H ENTREZGENE
PANTHER FACT COMPLEX SUBUNIT SPT16 UniProtKB/TrEMBL
  PTHR13980 UniProtKB/TrEMBL
Pfam FACT-Spt16_Nlob UniProtKB/TrEMBL
  Peptidase_M24 UniProtKB/TrEMBL
  Rtt106 UniProtKB/TrEMBL
  SPT16 UniProtKB/TrEMBL
  SPT16_C UniProtKB/TrEMBL
SMART FACT-Spt16_Nlob UniProtKB/TrEMBL
  Rtt106 UniProtKB/TrEMBL
  SPT16 UniProtKB/TrEMBL
Superfamily-SCOP SSF55920 UniProtKB/TrEMBL
UniProt A0A0D9RVC3 ENTREZGENE, UniProtKB/TrEMBL