CYP2B6 (cytochrome P450 family 2 subfamily B member 6) - Rat Genome Database

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Gene: CYP2B6 (cytochrome P450 family 2 subfamily B member 6) Chlorocebus sabaeus
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Symbol: CYP2B6
Name: cytochrome P450 family 2 subfamily B member 6
RGD ID: 18694696
Description: ENCODES a protein that exhibits anandamide 11,12 epoxidase activity (inferred); anandamide 14,15 epoxidase activity (inferred); anandamide 8,9 epoxidase activity (inferred); INVOLVED IN response to Aroclor 1254 (ortholog); response to bacterium (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH Acute Lymphoblastic Leukemia, with Lymphomatous Features (ortholog); acute myeloid leukemia (ortholog); autism spectrum disorder (ortholog); FOUND IN cytoplasm (inferred); endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); INTERACTS WITH (S)-nicotine; ethanol; nicotine
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytochrome P450 2B6; LOC103234720
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1635,392,699 - 35,418,171 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl635,393,342 - 35,418,106 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607313,588,241 - 13,611,993 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (EXP)
ethanol  (EXP)
nicotine  (EXP)
phenobarbital  (EXP)

Molecular Pathway Annotations     Click to see Annotation Detail View
acetylsalicylic acid pharmacodynamics pathway  (ISO)
antipyrine drug pathway  (ISO)
arachidonic acid metabolic pathway  (ISO)
carbamazepine pharmacokinetics pathway  (ISO)
celecoxib pharmacodynamics pathway  (ISO)
clopidogrel pharmacodynamics pathway  (ISO)
clopidogrel pharmacokinetics pathway  (ISO)
cyclophosphamide pharmacodynamics pathway  (ISO)
cyclophosphamide pharmacokinetics pathway  (ISO)
diclofenac pharmacodynamics pathway  (ISO)
diflunisal pharmacodynamics pathway  (ISO)
etodolac pharmacodynamics pathway  (ISO)
fenoprofen pharmacodynamics pathway  (ISO)
flurbiprofen pharmacodynamics pathway  (ISO)
ibuprofen pharmacodynamics pathway  (ISO)
ifosfamide pharmacodynamics pathway  (ISO)
ifosfamide pharmacokinetics pathway  (ISO)
indometacin pharmacodynamics pathway  (ISO)
indometacin pharmacodynamics pathway  (ISO)
ketoprofen pharmacodynamics pathway  (ISO)
ketorolac pharmacodynamics pathway  (ISO)
leukotriene C4 synthase deficiency pathway  (ISO)
lornoxicam pharmacodynamics pathway  (ISO)
magnesium salicylate pharmacodynamics pathway  (ISO)
mefenamic acid pharmacodynamics pathway  (ISO)
meloxicam pharmacodynamics pathway  (ISO)
methadone pharmacodynamics pathway  (ISO)
methadone pharmacokinetics pathway  (ISO)
nabumetone pharmacodynamics pathway  (ISO)
naproxen pharmacodynamics pathway  (ISO)
neviparine pharmacokinetics pathway  (ISO)
nicotine pharmacodynamics pathway  (ISO)
nicotine pharmacokinetics pathway   (ISO)
organophosphate response pathway   (ISO)
paracetamol drug pathway  (ISO)
piroxicam pharmacodynamics pathway   (ISO)
retinol metabolic pathway  (ISO)
salicylic acid pharmacodynamics pathway  (ISO)
sodium salicylate pharmacodynamics pathway  (ISO)
sorafenib pharmacokinetics pathway  (ISO)
sulindac pharmacodynamics pathway   (ISO)
tamoxifen pharmacodynamics pathway   (ISO)
tamoxifen pharmacokinetics pathway  (ISO)
tenoxicam pharmacodynamics pathway  (ISO)
tiaprofenic acid pharmacodynamics pathway  (ISO)
tolmetin pharmacodynamics pathway  (ISO)
tramadol pharmacokinetics pathway  (ISO)
valdecoxib pharmacodynamics pathway  (ISO)
valproic acid pharmacokinetics pathway  (ISO)
vitamin A deficiency pathway  (ISO)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CYP2B6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1635,392,699 - 35,418,171 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl635,393,342 - 35,418,106 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607313,588,241 - 13,611,993 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CYP2B6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381940,991,282 - 41,018,398 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1940,991,282 - 41,018,398 (+)EnsemblGRCh38hg38GRCh38
GRCh371941,497,187 - 41,524,303 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361946,189,044 - 46,216,141 (+)NCBINCBI36Build 36hg18NCBI36
Build 341946,189,043 - 46,216,141NCBI
Celera1938,297,361 - 38,324,463 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1937,929,211 - 37,956,335 (+)NCBIHuRef
CHM1_11941,496,934 - 41,524,020 (+)NCBICHM1_1
T2T-CHM13v2.01943,812,191 - 43,839,297 (+)NCBIT2T-CHM13v2.0
Cyp2b10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39725,597,083 - 25,626,049 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl725,597,045 - 25,626,049 (+)EnsemblGRCm39 Ensembl
GRCm38725,897,658 - 25,926,624 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl725,897,620 - 25,926,624 (+)EnsemblGRCm38mm10GRCm38
MGSCv37726,682,683 - 26,711,643 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36725,606,424 - 25,635,384 (+)NCBIMGSCv36mm8
Celera720,506,748 - 20,536,205 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map714.11NCBI
Cyp2b3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8190,780,468 - 90,859,852 (+)NCBIGRCr8
mRatBN7.2181,652,762 - 81,732,153 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl181,652,787 - 81,732,143 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx187,073,523 - 87,141,243 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0195,571,804 - 95,642,315 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0188,829,353 - 88,897,077 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0183,163,103 - 83,236,615 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,163,079 - 83,236,615 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0184,445,481 - 84,491,180 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4181,084,984 - 81,185,251 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1181,486,546 - 81,659,871 (+)NCBI
Celera176,082,604 - 76,158,885 (+)NCBICelera
Cytogenetic Map1q21NCBI
CYP2B6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22047,220,446 - 47,246,316 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11949,088,771 - 49,114,653 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01938,003,083 - 38,028,980 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11946,509,370 - 46,534,672 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1946,509,370 - 46,534,672 (+)Ensemblpanpan1.1panPan2
CYP2B6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,817,561 - 112,833,294 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,816,502 - 112,833,293 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1112,220,751 - 112,236,323 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,415,892 - 113,431,675 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,415,766 - 113,431,674 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,976,144 - 112,991,691 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,607,509 - 112,623,091 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,602,017 - 113,617,585 (+)NCBIUU_Cfam_GSD_1.0
CYP2B6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl649,110,812 - 49,178,334 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1649,158,175 - 49,173,872 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2644,968,257 - 44,978,794 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
48 26 17 23 23 42 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007996877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000001639   ⟹   ENSCSAP00000014443
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl635,393,342 - 35,418,106 (+)Ensembl
RefSeq Acc Id: XM_007996877   ⟹   XP_007995068
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1635,392,699 - 35,418,171 (+)NCBI
Vero_WHO_p1.0NW_02366607313,588,241 - 13,611,993 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007995068 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014443.1
RefSeq Acc Id: XP_007995068   ⟸   XM_007996877
- UniProtKB: A0A0D9S0Q4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000014443   ⟸   ENSCSAT00000001639


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003610 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001639.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/TrEMBL
InterPro Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_CS UniProtKB/TrEMBL
  Cyt_P450_E_grp-I UniProtKB/TrEMBL
  Cyt_P450_E_grp-I_CYP2B-like UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
  Cytochrome_P450_fam2 UniProtKB/TrEMBL
KEGG Report csab:103234720 UniProtKB/TrEMBL
NCBI Gene LOC103234720 ENTREZGENE
PANTHER CYTOCHROME P450 2B6 UniProtKB/TrEMBL
  CYTOCHROME P450 508A4-RELATED UniProtKB/TrEMBL
Pfam p450 UniProtKB/TrEMBL
PRINTS EP450I UniProtKB/TrEMBL
  EP450ICYP2B UniProtKB/TrEMBL
  P450 UniProtKB/TrEMBL
PROSITE CYTOCHROME_P450 UniProtKB/TrEMBL
Superfamily-SCOP SSF48264 UniProtKB/TrEMBL
UniProt A0A0D9S0Q4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:83385 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-25 CYP2B6  cytochrome P450 family 2 subfamily B member 6  LOC103234720  cytochrome P450 2B6  Symbol and/or name change 5135510 APPROVED