FLVCR1 (FLVCR choline and heme transporter 1) - Rat Genome Database

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Gene: FLVCR1 (FLVCR choline and heme transporter 1) Chlorocebus sabaeus
Analyze
Symbol: FLVCR1
Name: FLVCR choline and heme transporter 1
RGD ID: 18671964
Description: ENCODES a protein that exhibits choline transmembrane transporter activity (inferred); ethanolamine transmembrane transporter activity (inferred); heme binding (inferred); INVOLVED IN blood vessel development (ortholog); embryonic digit morphogenesis (ortholog); embryonic skeletal system morphogenesis (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); Diamond-Blackfan anemia (ortholog); fundus dystrophy (ortholog); FOUND IN mitochondrial membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: feline leukemia virus subgroup C cellular receptor 1; feline leukemia virus subgroup C receptor-related protein 1; FLVCR heme transporter 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12516,656,219 - 16,688,397 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2516,652,246 - 16,688,376 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605517,151,582 - 17,183,388 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FLVCR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12516,656,219 - 16,688,397 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2516,652,246 - 16,688,376 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605517,151,582 - 17,183,388 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FLVCR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,858,275 - 212,899,363 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1212,858,275 - 212,899,363 (+)EnsemblGRCh38hg38GRCh38
GRCh371213,031,617 - 213,072,705 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361211,098,220 - 211,135,379 (+)NCBINCBI36Build 36hg18NCBI36
Celera1186,257,592 - 186,295,983 (+)NCBICelera
Cytogenetic Map1q32.3NCBI
HuRef1183,708,670 - 183,749,562 (+)NCBIHuRef
CHM1_11214,303,965 - 214,345,035 (+)NCBICHM1_1
T2T-CHM13v2.01212,103,255 - 212,144,367 (+)NCBIT2T-CHM13v2.0
Flvcr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391190,738,029 - 190,758,387 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1190,738,044 - 190,758,355 (-)EnsemblGRCm39 Ensembl
GRCm381191,005,832 - 191,026,190 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1191,005,847 - 191,026,158 (-)EnsemblGRCm38mm10GRCm38
MGSCv371192,829,711 - 192,850,069 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361192,706,447 - 192,726,805 (-)NCBIMGSCv36mm8
Celera1197,930,699 - 197,951,041 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map196.28NCBI
Flvcr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813105,117,402 - 105,139,780 (-)NCBIGRCr8
mRatBN7.213102,586,263 - 102,608,647 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13102,586,257 - 102,608,661 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.013109,578,294 - 109,624,235 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13109,578,074 - 109,629,482 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013114,211,863 - 114,224,490 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.013114,180,812 - 114,183,817 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera13102,055,793 - 102,074,779 (-)NCBICelera
Cytogenetic Map13q27NCBI
Flvcr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554064,674,140 - 4,702,763 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554064,673,797 - 4,702,858 (-)NCBIChiLan1.0ChiLan1.0
FLVCR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2136,504,306 - 36,545,327 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1136,468,659 - 36,509,726 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01188,425,697 - 188,466,721 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11193,284,158 - 193,321,962 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1193,284,158 - 193,320,554 (+)Ensemblpanpan1.1panPan2
FLVCR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1711,001,155 - 11,038,910 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl711,001,101 - 11,035,980 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha710,576,761 - 10,614,312 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0710,707,668 - 10,745,429 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl710,707,433 - 10,745,177 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1710,630,123 - 10,667,529 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0710,731,550 - 10,769,463 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0710,856,188 - 10,893,897 (+)NCBIUU_Cfam_GSD_1.0
Flvcr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934463,453,117 - 63,486,909 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936557692,489 - 726,965 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936557693,445 - 727,166 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FLVCR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9130,541,660 - 130,570,702 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19130,543,911 - 130,570,486 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29143,470,869 - 143,497,447 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Flvcr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477118,239,437 - 18,270,408 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FLVCR1
612 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007988489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000013534   ⟹   ENSCSAP00000011529
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2516,652,246 - 16,688,376 (-)Ensembl
RefSeq Acc Id: XM_007988489   ⟹   XP_007986680
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12516,656,219 - 16,688,397 (-)NCBI
Vero_WHO_p1.0NW_02366605517,151,582 - 17,183,388 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007986680 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000011529
  ENSCSAP00000011529.1
RefSeq Acc Id: XP_007986680   ⟸   XM_007988489
- UniProtKB: A0A0D9RSE0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000011529   ⟸   ENSCSAT00000013534


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015440 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013534.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  SLC49-like UniProtKB/TrEMBL
KEGG Report csab:103230118 UniProtKB/TrEMBL
NCBI Gene FLVCR1 ENTREZGENE
PANTHER FELINE LEUKEMIA VIRUS SUBGROUP C RECEPTOR-RELATED PROTEIN 1 UniProtKB/TrEMBL
  MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A0D9RSE0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-11 FLVCR1  FLVCR choline and heme transporter 1  FLVCR1  FLVCR heme transporter 1  Symbol and/or name change 5135510 APPROVED