RDH10 (retinol dehydrogenase 10) - Rat Genome Database

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Gene: RDH10 (retinol dehydrogenase 10) Chlorocebus sabaeus
Analyze
Symbol: RDH10
Name: retinol dehydrogenase 10
RGD ID: 18620073
Description: ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NAD+) activity (inferred); all-trans-retinol dehydrogenase (NADP+) activity (inferred); oxidoreductase activity (inferred); INVOLVED IN positive regulation of retinoic acid biosynthetic process (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH Craniofacial Abnormalities (ortholog); Experimental Liver Cirrhosis (ortholog); Fetal Death (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: retinol dehydrogenase 10 (all-trans)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1868,903,665 - 68,933,536 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl868,904,352 - 68,933,792 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603972,438,768 - 72,468,649 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RDH10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1868,903,665 - 68,933,536 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl868,904,352 - 68,933,792 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603972,438,768 - 72,468,649 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RDH10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38873,294,602 - 73,325,281 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl873,294,602 - 73,325,281 (+)EnsemblGRCh38hg38GRCh38
GRCh37874,206,837 - 74,237,516 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36874,369,891 - 74,399,347 (+)NCBINCBI36Build 36hg18NCBI36
Build 34874,369,890 - 74,399,345NCBI
Celera870,204,803 - 70,235,112 (+)NCBICelera
Cytogenetic Map8q21.11NCBI
HuRef869,697,681 - 69,728,383 (+)NCBIHuRef
CHM1_1874,259,535 - 74,290,179 (+)NCBICHM1_1
T2T-CHM13v2.0873,724,122 - 73,754,883 (+)NCBIT2T-CHM13v2.0
Rdh10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,176,106 - 16,202,774 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,175,998 - 16,203,958 (+)EnsemblGRCm39 Ensembl
GRCm38116,105,882 - 16,132,550 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,105,774 - 16,133,734 (+)EnsemblGRCm38mm10GRCm38
MGSCv37116,095,963 - 16,122,631 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36116,091,096 - 16,117,764 (+)NCBIMGSCv36mm8
Celera116,041,876 - 16,068,353 (+)NCBICelera
Cytogenetic Map1A3NCBI
cM Map14.94NCBI
Rdh10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr857,969,931 - 7,998,834 (-)NCBIGRCr8
mRatBN7.253,186,671 - 3,215,572 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl53,188,445 - 3,215,572 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx55,305,902 - 5,332,978 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.056,944,767 - 6,971,843 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.056,641,260 - 6,668,810 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.052,605,265 - 2,631,905 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl52,603,505 - 2,632,030 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.052,593,904 - 2,620,243 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.452,286,373 - 2,314,154 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.152,286,372 - 2,314,154 (-)NCBI
Celera52,790,137 - 2,816,729 (-)NCBICelera
Cytogenetic Map5q11NCBI
Rdh10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554446,878,722 - 6,909,421 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554446,878,722 - 6,909,421 (-)NCBIChiLan1.0ChiLan1.0
RDH10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2789,041,778 - 89,072,092 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1864,671,524 - 64,701,024 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0869,833,320 - 69,863,536 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1871,481,094 - 71,510,689 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl871,481,089 - 71,510,689 (+)Ensemblpanpan1.1panPan2
RDH10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12921,886,014 - 21,912,451 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2921,885,012 - 21,911,303 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2922,150,310 - 22,176,734 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02921,995,836 - 22,022,275 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2921,994,920 - 22,022,273 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12922,053,870 - 22,080,295 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02922,090,663 - 22,117,118 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02922,371,574 - 22,398,035 (+)NCBIUU_Cfam_GSD_1.0
Rdh10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530357,360,563 - 57,388,453 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366482,060,125 - 2,088,833 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366482,060,131 - 2,088,021 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RDH10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl462,569,885 - 62,601,439 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1462,569,877 - 62,600,981 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Rdh10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474417,837,609 - 17,868,431 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474417,838,047 - 17,868,423 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RDH10
472 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008000873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000011683   ⟹   ENSCSAP00000009749
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl868,904,352 - 68,933,792 (+)Ensembl
RefSeq Acc Id: XM_008000873   ⟹   XP_007999064
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1868,903,665 - 68,933,536 (+)NCBI
Vero_WHO_p1.0NW_02366603972,438,768 - 72,468,649 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007999064 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000009749
  ENSCSAP00000009749.1
RefSeq Acc Id: XP_007999064   ⟸   XM_008000873
- UniProtKB: A0A0D9RMB0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000009749   ⟸   ENSCSAT00000011683


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013587 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000011683.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  Sc_DH/Rdtase_CS UniProtKB/TrEMBL
  SDR_fam UniProtKB/TrEMBL
KEGG Report csab:103236970 UniProtKB/TrEMBL
NCBI Gene RDH10 ENTREZGENE
PANTHER PKSB UniProtKB/TrEMBL
  RETINOL DEHYDROGENASE 10 UniProtKB/TrEMBL
Pfam adh_short UniProtKB/TrEMBL
PRINTS GDHRDH UniProtKB/TrEMBL
  SDRFAMILY UniProtKB/TrEMBL
PROSITE ADH_SHORT UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A0D9RMB0 ENTREZGENE, UniProtKB/TrEMBL