IQGAP3 (IQ motif containing GTPase activating protein 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: IQGAP3 (IQ motif containing GTPase activating protein 3) Chlorocebus sabaeus
Analyze
Symbol: IQGAP3
Name: IQ motif containing GTPase activating protein 3
RGD ID: 18608757
Description: ENCODES a protein that exhibits actin filament binding (inferred); calmodulin binding (inferred); GTPase activator activity (inferred); INVOLVED IN positive regulation of protein phosphorylation (ortholog); protein phosphorylation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cell cortex (inferred); cell-cell junction (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras GTPase-activating-like protein IQGAP3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,286,819 - 7,334,352 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,286,886 - 7,333,284 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660386,586,464 - 6,633,765 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
IQGAP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,286,819 - 7,334,352 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,286,886 - 7,333,284 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660386,586,464 - 6,633,765 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
IQGAP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,525,405 - 156,572,565 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,525,405 - 156,572,604 (-)EnsemblGRCh38hg38GRCh38
GRCh371156,495,197 - 156,542,357 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,761,821 - 154,809,020 (-)NCBINCBI36Build 36hg18NCBI36
Build 341153,308,270 - 153,355,469NCBI
Celera1129,568,222 - 129,613,182 (-)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,855,158 - 127,900,121 (-)NCBIHuRef
CHM1_11157,891,665 - 157,938,571 (-)NCBICHM1_1
T2T-CHM13v2.01155,663,992 - 155,708,965 (-)NCBIT2T-CHM13v2.0
Iqgap3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39387,989,309 - 88,028,355 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl387,989,278 - 88,028,355 (+)EnsemblGRCm39 Ensembl
GRCm38388,082,002 - 88,121,048 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,081,971 - 88,121,048 (+)EnsemblGRCm38mm10GRCm38
MGSCv37387,885,973 - 87,924,970 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,167,927 - 88,206,975 (+)NCBIMGSCv36mm8
Celera388,121,650 - 88,160,680 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.78NCBI
Iqgap3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82175,840,001 - 175,881,799 (+)NCBIGRCr8
mRatBN7.22173,542,151 - 173,583,956 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2173,542,110 - 173,583,956 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2180,687,034 - 180,729,301 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02178,709,397 - 178,751,662 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,309,550 - 173,351,256 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,447,477 - 187,489,630 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,447,501 - 187,489,630 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02206,850,518 - 206,892,647 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,155,679 - 180,198,814 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,105,779 - 180,148,920 (+)NCBI
Celera2167,489,087 - 167,530,440 (+)NCBICelera
Cytogenetic Map2q34NCBI
Iqgap3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,628,552 - 2,663,737 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,627,334 - 2,663,786 (-)NCBIChiLan1.0ChiLan1.0
IQGAP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,271,635 - 93,322,412 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1193,006,109 - 93,051,298 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,869,002 - 131,916,554 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,695,602 - 135,740,564 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,695,602 - 135,740,564 (-)Ensemblpanpan1.1panPan2
IQGAP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,384,539 - 41,420,529 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,382,994 - 41,419,742 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha740,872,320 - 40,909,618 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,248,244 - 41,286,318 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl741,248,319 - 41,283,331 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,029,802 - 41,067,862 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,083,049 - 41,121,112 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,366,730 - 41,404,794 (+)NCBIUU_Cfam_GSD_1.0
Iqgap3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,681,729 - 26,721,359 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,713,156 - 5,751,721 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,712,118 - 5,751,721 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IQGAP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,513,187 - 93,559,001 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,495,999 - 93,556,915 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,133,942 - 102,178,070 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Iqgap3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,730,771 - 1,765,180 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248851,730,079 - 1,765,250 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IQGAP3
1162 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000000163   ⟹   ENSCSAP00000015890
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl207,286,886 - 7,333,284 (+)Ensembl
RefSeq Acc Id: XM_007976783   ⟹   XP_007974974
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1207,286,819 - 7,334,352 (+)NCBI
Vero_WHO_p1.0NW_0236660386,586,464 - 6,633,765 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007976785   ⟹   XP_007974976
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1207,286,819 - 7,334,352 (+)NCBI
Vero_WHO_p1.0NW_0236660386,586,464 - 6,633,765 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037997758   ⟹   XP_037853686
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660386,586,464 - 6,633,765 (+)NCBI
RefSeq Acc Id: XM_037997759   ⟹   XP_037853687
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660386,586,464 - 6,633,765 (+)NCBI
RefSeq Acc Id: XM_037997760   ⟹   XP_037853688
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660386,586,464 - 6,633,765 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007974974 (Get FASTA)   NCBI Sequence Viewer  
  XP_007974976 (Get FASTA)   NCBI Sequence Viewer  
  XP_037853686 (Get FASTA)   NCBI Sequence Viewer  
  XP_037853687 (Get FASTA)   NCBI Sequence Viewer  
  XP_037853688 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015890.1
RefSeq Acc Id: XP_007974974   ⟸   XM_007976783
- Peptide Label: isoform X4
- UniProtKB: A0A0D9S4V1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007974976   ⟸   XM_007976785
- Peptide Label: isoform X5
- UniProtKB: A0A0D9S4V1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000015890   ⟸   ENSCSAT00000000163
RefSeq Acc Id: XP_037853686   ⟸   XM_037997758
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S4V1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037853687   ⟸   XM_037997759
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S4V1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037853688   ⟸   XM_037997760
- Peptide Label: isoform X3
- UniProtKB: A0A0D9S4V1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002151 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000163.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  1.20.5.190 UniProtKB/TrEMBL
  GTPase Activation - p120gap, domain 1 UniProtKB/TrEMBL
InterPro CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  IQ_motif_EF-hand-BS UniProtKB/TrEMBL
  RasGAP_C UniProtKB/TrEMBL
  RasGAP_CS UniProtKB/TrEMBL
  RasGAP_dom UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  WW_dom UniProtKB/TrEMBL
NCBI Gene IQGAP3 ENTREZGENE
PANTHER RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF UniProtKB/TrEMBL
  RAS GTPASE-ACTIVATING-LIKE PROTEIN IQGAP3 UniProtKB/TrEMBL
Pfam PF00307 UniProtKB/TrEMBL
  PF00612 UniProtKB/TrEMBL
  RasGAP UniProtKB/TrEMBL
  RasGAP_C UniProtKB/TrEMBL
PROSITE PS50021 UniProtKB/TrEMBL
  PS50096 UniProtKB/TrEMBL
  RAS_GTPASE_ACTIV_1 UniProtKB/TrEMBL
  RAS_GTPASE_ACTIV_2 UniProtKB/TrEMBL
  WW_DOMAIN_1 UniProtKB/TrEMBL
  WW_DOMAIN_2 UniProtKB/TrEMBL
SMART RasGAP UniProtKB/TrEMBL
  SM00015 UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
Superfamily-SCOP RGC domain-like UniProtKB/TrEMBL
  SSF47576 UniProtKB/TrEMBL
  SSF48350 UniProtKB/TrEMBL
UniProt A0A0D9S4V1 ENTREZGENE, UniProtKB/TrEMBL