SLC25A19 (solute carrier family 25 member 19) - Rat Genome Database

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Gene: SLC25A19 (solute carrier family 25 member 19) Chlorocebus sabaeus
Analyze
Symbol: SLC25A19
Name: solute carrier family 25 member 19
RGD ID: 18536351
Description: ENCODES a protein that exhibits deoxynucleotide transmembrane transporter activity (ortholog); INVOLVED IN deoxynucleotide transport (ortholog); ASSOCIATED WITH Amish Lethal Microcephaly (ortholog); genetic disease (ortholog); microcephaly (ortholog); FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mitochondrial thiamine pyrophosphate carrier
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,380,665 - 46,403,532 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,381,271 - 46,403,360 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607717,150,051 - 17,169,518 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SLC25A19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,380,665 - 46,403,532 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,381,271 - 46,403,360 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607717,150,051 - 17,169,518 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SLC25A19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,272,992 - 75,289,433 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,272,981 - 75,289,510 (-)EnsemblGRCh38hg38GRCh38
GRCh371773,269,073 - 73,285,514 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,780,669 - 70,797,109 (-)NCBINCBI36Build 36hg18NCBI36
Build 341770,780,668 - 70,797,109NCBI
Celera1769,861,413 - 69,877,887 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,679,265 - 68,696,066 (-)NCBIHuRef
CHM1_11773,333,658 - 73,350,100 (-)NCBICHM1_1
T2T-CHM13v2.01776,165,078 - 76,181,525 (-)NCBIT2T-CHM13v2.0
Slc25a19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,504,991 - 115,519,122 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,505,004 - 115,519,121 (-)EnsemblGRCm39 Ensembl
GRCm3811115,614,165 - 115,628,296 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,614,178 - 115,628,295 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711115,476,297 - 115,489,453 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,431,073 - 115,444,229 (-)NCBIMGSCv36mm8
Celera11127,382,733 - 127,395,903 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.91NCBI
Slc25a19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,353,426 - 101,366,551 (-)NCBIGRCr8
mRatBN7.210100,853,554 - 100,867,517 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,847,168 - 100,867,447 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10105,914,684 - 105,927,637 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010105,377,757 - 105,390,710 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010100,775,447 - 100,788,372 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010104,166,594 - 104,179,523 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,166,598 - 104,179,523 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010104,101,681 - 104,114,610 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,694,526 - 105,707,452 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110105,709,029 - 105,721,956 (-)NCBI
Celera1099,428,914 - 99,441,839 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Slc25a19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555532,134,715 - 2,160,777 (-)NCBIChiLan1.0ChiLan1.0
SLC25A19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21991,312,529 - 91,329,536 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11796,135,619 - 96,152,601 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01769,220,073 - 69,237,067 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11774,773,341 - 74,789,700 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1774,773,341 - 74,789,699 (-)Ensemblpanpan1.1panPan2
SLC25A19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,208,982 - 5,226,925 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,209,059 - 5,226,569 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,888,236 - 5,905,909 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,879,063 - 5,896,973 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,879,117 - 5,896,971 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,917,854 - 5,935,745 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,028,083 - 6,045,961 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,087,988 - 6,105,697 (+)NCBIUU_Cfam_GSD_1.0
Slc25a19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,841,303 - 5,854,135 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936594557,823 - 570,599 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,033,669 - 6,046,763 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,033,605 - 6,045,435 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,824,120 - 5,835,897 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Slc25a19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248015,086,925 - 5,114,171 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC25A19
399 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000002767   ⟹   ENSCSAP00000001074
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1646,381,271 - 46,403,360 (+)Ensembl
RefSeq Acc Id: XM_037993518   ⟹   XP_037849446
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607717,150,051 - 17,169,518 (+)NCBI
RefSeq Acc Id: XM_037993519   ⟹   XP_037849447
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607717,150,720 - 17,169,518 (+)NCBI
RefSeq Acc Id: XM_037993520   ⟹   XP_037849448
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607717,150,051 - 17,169,518 (+)NCBI
RefSeq Acc Id: XM_037993521   ⟹   XP_037849449
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607717,150,051 - 17,169,518 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037849446 (Get FASTA)   NCBI Sequence Viewer  
  XP_037849447 (Get FASTA)   NCBI Sequence Viewer  
  XP_037849448 (Get FASTA)   NCBI Sequence Viewer  
  XP_037849449 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000001074.1
Ensembl Acc Id: ENSCSAP00000001074   ⟸   ENSCSAT00000002767
RefSeq Acc Id: XP_037849446   ⟸   XM_037993518
- Peptide Label: isoform X1
- UniProtKB: A0A0D9QXI5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037849449   ⟸   XM_037993521
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037849448   ⟸   XM_037993520
- Peptide Label: isoform X1
- UniProtKB: A0A0D9QXI5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037849447   ⟸   XM_037993519
- Peptide Label: isoform X1
- UniProtKB: A0A0D9QXI5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004737 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002767.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
KEGG Report csab:103243052 UniProtKB/TrEMBL
NCBI Gene SLC25A19 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 25 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PRINTS MITOCARRIER UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A0D9QXI5 ENTREZGENE, UniProtKB/TrEMBL