SERPINH1 (serpin family H member 1) - Rat Genome Database

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Gene: SERPINH1 (serpin family H member 1) Chlorocebus sabaeus
Analyze
Symbol: SERPINH1
Name: serpin family H member 1
RGD ID: 18535725
Description: ENCODES a protein that exhibits collagen binding (inferred); serine-type endopeptidase inhibitor activity (inferred); unfolded protein binding (inferred); INVOLVED IN chondrocyte development involved in endochondral bone morphogenesis (inferred); collagen biosynthetic process (inferred); collagen fibril organization (inferred); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); adult respiratory distress syndrome (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (inferred); endoplasmic reticulum (inferred); endoplasmic reticulum-Golgi intermediate compartment (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serpin H1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,787,978 - 66,798,930 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,788,240 - 66,799,072 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604359,006,758 - 59,017,494 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SERPINH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,787,978 - 66,798,930 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,788,240 - 66,799,072 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604359,006,758 - 59,017,494 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SERPINH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381175,562,253 - 75,572,783 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1175,562,056 - 75,572,783 (+)EnsemblGRCh38hg38GRCh38
GRCh371175,273,298 - 75,283,828 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361174,950,818 - 74,961,494 (+)NCBINCBI36Build 36hg18NCBI36
Build 341174,950,817 - 74,961,492NCBI
Celera1172,580,950 - 72,591,621 (+)NCBICelera
Cytogenetic Map11q13.5NCBI
HuRef1171,570,181 - 71,580,924 (+)NCBIHuRef
CHM1_11175,156,705 - 75,167,451 (+)NCBICHM1_1
T2T-CHM13v2.01175,491,520 - 75,502,159 (+)NCBIT2T-CHM13v2.0
Serpinh1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39798,994,583 - 99,002,321 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl798,994,583 - 99,002,446 (-)EnsemblGRCm39 Ensembl
GRCm38799,345,375 - 99,353,239 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl799,345,376 - 99,353,239 (-)EnsemblGRCm38mm10GRCm38
MGSCv377106,493,885 - 106,501,749 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36799,219,459 - 99,227,179 (-)NCBIMGSCv36mm8
Celera799,670,192 - 99,678,104 (-)NCBICelera
Cytogenetic Map7E1NCBI
cM Map754.07NCBI
Serpinh1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81163,055,630 - 163,063,177 (-)NCBIGRCr8
mRatBN7.21153,643,500 - 153,650,853 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1153,643,510 - 153,650,801 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1161,639,548 - 161,646,892 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01168,819,703 - 168,827,047 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01161,693,225 - 161,700,569 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01164,301,010 - 164,308,306 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,301,010 - 164,308,317 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01170,503,468 - 170,510,764 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41156,666,914 - 156,674,210 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11156,745,319 - 156,752,617 (-)NCBI
Celera1151,727,297 - 151,734,593 (-)NCBICelera
Cytogenetic Map1q32NCBI
Serpinh1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541416,284,845 - 16,292,963 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541416,284,845 - 16,292,828 (-)NCBIChiLan1.0ChiLan1.0
SERPINH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2976,486,335 - 76,503,355 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11177,528,934 - 77,545,958 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01170,621,893 - 70,632,570 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11173,922,617 - 73,933,379 (+)NCBIpanpan1.1PanPan1.1panPan2
SERPINH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12123,032,761 - 23,041,649 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2123,032,767 - 23,041,625 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2122,798,470 - 22,807,285 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02123,235,602 - 23,244,497 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2123,235,605 - 23,244,400 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12123,034,077 - 23,042,936 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02123,230,397 - 23,239,216 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02123,148,229 - 23,157,093 (-)NCBIUU_Cfam_GSD_1.0
Serpinh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494762,742,342 - 62,751,791 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364984,341,899 - 4,351,524 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364984,341,944 - 4,351,432 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SERPINH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl99,783,042 - 9,794,483 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.199,782,939 - 9,794,485 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2910,966,800 - 10,977,248 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Serpinh1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248171,561,471 - 1,570,947 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248171,561,471 - 1,570,425 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SERPINH1
307 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000001942   ⟹   ENSCSAP00000000273
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl166,788,240 - 66,799,072 (+)Ensembl
RefSeq Acc Id: XM_008020182   ⟹   XP_008018373
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1166,787,978 - 66,798,930 (+)NCBI
Vero_WHO_p1.0NW_02366604359,006,758 - 59,017,459 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008020183   ⟹   XP_008018374
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1166,788,197 - 66,798,930 (+)NCBI
Vero_WHO_p1.0NW_02366604359,006,758 - 59,017,494 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038005458   ⟹   XP_037861386
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604359,006,758 - 59,017,191 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008018373 (Get FASTA)   NCBI Sequence Viewer  
  XP_008018374 (Get FASTA)   NCBI Sequence Viewer  
  XP_037861386 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000273
  ENSCSAP00000000273.1
RefSeq Acc Id: XP_008018373   ⟸   XM_008020182
- UniProtKB: A0A0D9QV84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008018374   ⟸   XM_008020183
- UniProtKB: A0A0D9QV84 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000000273   ⟸   ENSCSAT00000001942
RefSeq Acc Id: XP_037861386   ⟸   XM_038005458
- UniProtKB: A0A0D9QV84 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003909 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001942.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.39.10 UniProtKB/TrEMBL
  3.30.497.10 UniProtKB/TrEMBL
InterPro Serpin_CS UniProtKB/TrEMBL
  Serpin_dom UniProtKB/TrEMBL
  Serpin_fam UniProtKB/TrEMBL
  Serpin_H1_domain UniProtKB/TrEMBL
  Serpin_sf UniProtKB/TrEMBL
  Serpin_sf_1 UniProtKB/TrEMBL
  Serpin_sf_2 UniProtKB/TrEMBL
NCBI Gene SERPINH1 ENTREZGENE
PANTHER PTHR11461 UniProtKB/TrEMBL
  PTHR11461:SF27 UniProtKB/TrEMBL
Pfam Serpin UniProtKB/TrEMBL
PROSITE SERPIN UniProtKB/TrEMBL
SMART SERPIN UniProtKB/TrEMBL
Superfamily-SCOP SSF56574 UniProtKB/TrEMBL
UniProt A0A0D9QV84 ENTREZGENE, UniProtKB/TrEMBL