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Gene: LYZL6 (lysozyme like 6) Chlorocebus sabaeus

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Symbol:

LYZL6

Name:

lysozyme like 6

RGD ID:

18493292

Description:

ENCODES a protein that exhibits lysozyme activity (inferred); INVOLVED IN defense response to bacterium (inferred); fertilization (inferred); fusion of sperm to egg plasma membrane involved in single fertilization (inferred); FOUND IN sperm midpiece (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

lysozyme-like protein 6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LYZL6 (lysozyme like 6)	NCBI	Ortholog
Mus musculus (house mouse):	Lyzl6 (lysozyme-like 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Lyzl6 (lysozyme-like 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lyzl6 (lysozyme like 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LYZL6 (lysozyme like 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC480492 (lysozyme-like protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lyzl6 (lysozyme like 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LYZL6 (lysozyme like 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lyzl6 (lysozyme like 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	29,422,736 - 29,432,651 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	29,423,005 - 29,427,525 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	542,869 - 552,933 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

defense response to bacterium (IEA)

fertilization (IEA)

fusion of sperm to egg plasma membrane involved in single fertilization (IEA)

Cellular Component

acrosomal vesicle (IEA)

sperm flagellum (IEA)

sperm midpiece (ISO)

sperm plasma membrane (IEA)

Molecular Function

lysozyme activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LYZL6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	29,422,736 - 29,432,651 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	29,423,005 - 29,427,525 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	542,869 - 552,933 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LYZL6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	35,934,518 - 35,943,713 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	35,934,518 - 35,943,713 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	34,261,522 - 34,270,717 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	31,285,638 - 31,290,623 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	31,285,637 - 31,290,623	NCBI
Celera	17	31,171,081 - 31,176,066 (-)	NCBI		Celera
Cytogenetic Map	17	q12	NCBI
HuRef	17	30,446,535 - 30,455,714 (-)	NCBI		HuRef
CHM1_1	17	34,326,089 - 34,335,270 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	36,882,425 - 36,891,620 (-)	NCBI		T2T-CHM13v2.0

Lyzl6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	103,521,894 - 103,529,716 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	103,521,896 - 103,529,716 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	103,631,068 - 103,638,890 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	103,631,070 - 103,638,890 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	103,492,387 - 103,500,188 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	103,447,163 - 103,454,964 (-)	NCBI		MGSCv36	mm8
Celera	11	115,343,584 - 115,351,367 (-)	NCBI		Celera
Cytogenetic Map	11	E1	NCBI
cM Map	11	67.4	NCBI

Lyzl6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	89,044,375 - 89,049,210 (-)	NCBI		GRCr8
mRatBN7.2	10	88,544,342 - 88,549,177 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	88,544,342 - 88,549,177 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	93,582,729 - 93,587,545 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	93,047,873 - 93,052,703 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	88,441,226 - 88,446,058 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	91,694,547 - 91,701,428 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	91,694,547 - 91,699,424 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	91,461,085 - 91,466,620 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	92,787,372 - 92,792,857 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	92,801,878 - 92,817,736 (-)	NCBI
Celera	10	87,243,913 - 87,248,691 (-)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

Lyzl6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	223,484 - 237,975 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	225,132 - 273,565 (-)	NCBI	ChiLan1.0	ChiLan1.0

LYZL6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	28,534,182 - 28,543,367 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	30,413,179 - 30,422,364 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	20,852,333 - 20,861,505 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	21,147,928 - 21,157,112 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	21,147,928 - 21,157,112 (+)	Ensembl	panpan1.1		panPan2

LOC480492
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	10,267,569 - 10,275,791 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	10,022,673 - 10,030,834 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	11,858,075 - 11,866,303 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	9	10,868,732 - 10,876,938 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	16,645,058 - 16,653,283 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	16,592,131 - 16,600,362 (-)	NCBI		UU_Cfam_GSD_1.0

Lyzl6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	17,388,059 - 17,393,385 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936541	1,801,350 - 1,804,908 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936541	1,801,350 - 1,804,767 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LYZL6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	17,839,555 - 17,847,014 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	17,842,766 - 17,847,017 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	17,917,551 - 17,924,963 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Lyzl6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	5,758,451 - 5,760,610 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624786	5,758,321 - 5,762,276 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
2	1	18	18	18	2	1

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008011095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000004244 ⟹ ENSCSAP00000002503

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	16	29,423,005 - 29,427,525 (-)	Ensembl

RefSeq Acc Id:

XM_008011095 ⟹ XP_008009286

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	16	29,422,736 - 29,432,651 (-)	NCBI
Vero_WHO_p1.0	NW_023666075	542,869 - 552,933 (+)	NCBI

Sequence:

show sequence

GGAGAGCTGTTAGTTGGGCAGGGCTGAAACATACATGGTGAGGAAGAAGAGGCTCCTACTGTAG
ACGGCCTTTTTCTACAGATCCTCCCAGAAATCCCTGGGCCAGCTGGAACCTGGAGTCAGAGAGG
GATGGGAGAGAGATTCCCCAGGCTCTCAGAGAAGATCAGCAGAAAGTCTGCAAGACCCTAAGAA
TCGTCAGCCCTCAGCTGCACCTCCTCCCCTCCAAGGATGACAAAGGTGCTACTCATCTACTTGG
TCAGCAGCTTTCTTGCCCTAAATCAGGCCAGCCTCATCAGTCGCTGTGACTTGGCCCAGGTGCT
GCAGCTGGAGGACTTGGATGGGTTTGAGGGTTACTCCCTGAGTGACTGGCTGTGCCTGGCTTTT
GTGGAAAGCAAGTTCAACATATCAAAGATAAATGAAAACGCAGATGGAAGCTTTGACTATGGCC
TCTTCCAGATCAACGGCCACTACTGGTGCAACGATTATAGGAGTCACTCGGAAAACCTTTGCCA
GGTGGACTGTCAAGATCTGCTCAATCCCAACCTTCTCGCAGGCATCCACTGTGCAAAAAGGATC
GTGTCCGGAGCACGGGGGATGAACAACTGGGTAGAATGGAGGTTGCACTGTTCAGGCCGGCCAC
TCTCCTACTGGCTGACAGGATGCCGACTGGGATGAAACAGGGTGCGGGTGCACCATGGAGTCAT
TCCAAGACTCCTATCCTTACTCAGGAATTCTTCATTTCTTCTTCCTATGCCTCAACTTCATGTT
ATTTTCTTCCCTTCCCATTTACAACTAAAACTGACCAGAGCCCCAAGAATAAATTATTTTCTTG
GCTTCCTCCTTACTCCCATCTGGACCCAGTCCCCTGGTTCCTGTCTGTCATTTGTAAACAGAGG
ACCACAATAAAGAAAACTCTATATTTATTGAAGCACTCACTCTGCAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008009286	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000002503
	ENSCSAP00000002503.1

RefSeq Acc Id:	XP_008009286 ⟸ XM_008011095
- UniProtKB:	A0A0D9R1L4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000002503 ⟸ ENSCSAT00000004244

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000006206	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000004244.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.530.10	UniProtKB/TrEMBL
InterPro	Glyco_hydro_22	UniProtKB/TrEMBL
	Glyco_hydro_22_CS	UniProtKB/TrEMBL
	Glyco_hydro_22_lys	UniProtKB/TrEMBL
	Lysozyme-like_dom_sf	UniProtKB/TrEMBL
KEGG Report	csab:103242758	UniProtKB/TrEMBL
NCBI Gene	LYZL6	ENTREZGENE
PANTHER	PTHR11407	UniProtKB/TrEMBL
	PTHR11407:SF9	UniProtKB/TrEMBL
Pfam	Lys	UniProtKB/TrEMBL
PRINTS	LYSOZYME	UniProtKB/TrEMBL
	LYZLACT	UniProtKB/TrEMBL
PROSITE	GLYCOSYL_HYDROL_F22_1	UniProtKB/TrEMBL
	GLYCOSYL_HYDROL_F22_2	UniProtKB/TrEMBL
SMART	LYZ1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53955	UniProtKB/TrEMBL
UniProt	A0A0D9R1L4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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