SEPTIN7 (septin 7) - Rat Genome Database

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Gene: SEPTIN7 (septin 7) Chlorocebus sabaeus
Analyze
Symbol: SEPTIN7
Name: septin 7
RGD ID: 18426751
Description: ENCODES a protein that exhibits structural constituent of postsynapse (ortholog); INVOLVED IN collateral sprouting (ortholog); cortical cytoskeleton organization (ortholog); D-glucose import (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN axon terminus (ortholog); cell cortex (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SEPT7; septin-7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12122,521,109 - 22,626,464 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2122,522,127 - 22,626,504 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604282,228,173 - 82,334,085 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SEPTIN7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12122,521,109 - 22,626,464 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2122,522,127 - 22,626,504 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604282,228,173 - 82,334,085 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SEPTIN7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38735,800,986 - 35,915,763 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl735,800,932 - 35,907,110 (+)EnsemblGRCh38hg38GRCh38
GRCh37735,840,596 - 35,946,720 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36735,807,152 - 35,911,442 (+)NCBINCBI36Build 36hg18NCBI36
Celera735,824,379 - 35,928,642 (+)NCBICelera
Cytogenetic Map7p14.2NCBI
HuRef735,721,280 - 35,827,809 (+)NCBIHuRef
CHM1_1735,840,201 - 35,946,302 (+)NCBICHM1_1
T2T-CHM13v2.0735,941,987 - 36,057,268 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2735,878,645 - 35,984,746 (+)NCBI
Septin7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39925,163,287 - 25,219,867 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl925,163,735 - 25,219,867 (+)EnsemblGRCm39 Ensembl
GRCm38925,251,991 - 25,308,571 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl925,252,439 - 25,308,571 (+)EnsemblGRCm38mm10GRCm38
MGSCv37925,060,169 - 25,116,150 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36925,002,201 - 25,058,011 (+)NCBIMGSCv36mm8
Celera922,511,513 - 22,567,507 (+)NCBICelera
Cytogenetic Map9A4NCBI
cM Map910.25NCBI
Septin7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8831,995,597 - 32,059,069 (+)NCBIGRCr8
mRatBN7.2823,719,448 - 23,783,247 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl823,716,030 - 23,783,243 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx827,778,155 - 27,841,415 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0826,075,443 - 26,138,703 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0823,944,735 - 24,008,197 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0826,412,910 - 26,476,615 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl826,413,233 - 26,476,611 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0826,434,684 - 26,498,715 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4824,924,747 - 24,988,221 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1824,924,783 - 24,987,286 (+)NCBI
Celera825,288,734 - 25,351,965 (+)NCBICelera
Cytogenetic Map8q13NCBI
Septin7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554607,287,452 - 7,374,747 (-)NCBIChiLan1.0ChiLan1.0
SEPTIN7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2640,625,982 - 40,730,383 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1788,950,716 - 89,055,117 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0736,427,252 - 36,531,668 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1736,662,157 - 36,767,643 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl736,662,430 - 36,766,632 (+)Ensemblpanpan1.1panPan2
SEPTIN7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11447,395,704 - 47,494,873 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1447,395,603 - 47,494,385 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1446,820,663 - 46,938,583 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01447,319,527 - 47,437,496 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1447,319,483 - 47,439,846 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11447,425,320 - 47,543,217 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01447,102,710 - 47,220,654 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01447,475,957 - 47,593,931 (+)NCBIUU_Cfam_GSD_1.0
Septin7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511892,207,528 - 92,317,219 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647811,419,334 - 11,528,954 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEPTIN7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1838,068,303 - 38,284,645 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11838,082,626 - 38,183,354 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21841,967,902 - 42,068,925 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Septin7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474025,083,414 - 25,179,493 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SEPTIN7
1696 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000013038   ⟹   ENSCSAP00000011050
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2122,522,127 - 22,626,504 (-)Ensembl
RefSeq Acc Id: XM_007981619   ⟹   XP_007979810
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12122,521,109 - 22,626,426 (-)NCBI
Vero_WHO_p1.0NW_02366604282,228,173 - 82,334,085 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007981623   ⟹   XP_007979814
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12122,521,109 - 22,626,464 (-)NCBI
Vero_WHO_p1.0NW_02366604282,228,222 - 82,334,085 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007981624   ⟹   XP_007979815
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12122,521,109 - 22,626,426 (-)NCBI
Vero_WHO_p1.0NW_02366604282,228,295 - 82,334,085 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038004830   ⟹   XP_037860758
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604282,228,281 - 82,334,085 (+)NCBI
RefSeq Acc Id: XM_038004831   ⟹   XP_037860759
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604282,228,391 - 82,334,085 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007979810 (Get FASTA)   NCBI Sequence Viewer  
  XP_007979814 (Get FASTA)   NCBI Sequence Viewer  
  XP_007979815 (Get FASTA)   NCBI Sequence Viewer  
  XP_037860758 (Get FASTA)   NCBI Sequence Viewer  
  XP_037860759 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000011050.1
RefSeq Acc Id: XP_007979814   ⟸   XM_007981623
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RR11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007979815   ⟸   XM_007981624
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RR11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007979810   ⟸   XM_007981619
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RR11 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000011050   ⟸   ENSCSAT00000013038
RefSeq Acc Id: XP_037860758   ⟸   XM_038004830
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RR11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037860759   ⟸   XM_038004831
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RR11 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014993 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013038.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro G_SEPTIN_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Septin UniProtKB/TrEMBL
  Septin7 UniProtKB/TrEMBL
NCBI Gene SEPTIN7 ENTREZGENE
PANTHER SEPTIN UniProtKB/TrEMBL
Pfam Septin UniProtKB/TrEMBL
PIRSF Septin UniProtKB/TrEMBL
PRINTS SEPTIN7 UniProtKB/TrEMBL
PROSITE G_SEPTIN UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9RR11 ENTREZGENE, UniProtKB/TrEMBL