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Gene: CTCF (CCCTC-binding factor) Chlorocebus sabaeus

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Symbol:

CTCF

Name:

CCCTC-binding factor

RGD ID:

18411561

Description:

ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); INVOLVED IN positive regulation of miRNA transcription (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); autosomal dominant intellectual developmental disorder 21 (ortholog); basal cell carcinoma (ortholog); FOUND IN dense fibrillar component (ortholog); granular component (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

atherin-like; LOC103233542; transcriptional repressor CTCF

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CTCF (CCCTC-binding factor)	NCBI	Ortholog
Mus musculus (house mouse):	Ctcf (CCCTC-binding factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ctcf (CCCTC-binding factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ctcf (CCCTC-binding factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CTCF (CCCTC-binding factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CTCF (CCCTC-binding factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ctcf (CCCTC-binding factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CTCF (CCCTC-binding factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ctcf (CCCTC-binding factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	59,806,753 - 59,889,534 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	59,806,551 - 59,880,049 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	22,559,050 - 22,640,771 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant dyskeratosis congenita 6 (ISO)

autosomal dominant intellectual developmental disorder 21 (ISO)

basal cell carcinoma (ISO)

breast cancer (ISO)

breast carcinoma (ISO)

childhood acute lymphocytic leukemia (ISO)

Chromosome 16q12 Duplication Syndrome (ISO)

chromosome 16q22 deletion syndrome (ISO)

desmoplastic/nodular medulloblastoma (ISO)

Experimental Neoplasms (ISO)

female breast cancer (ISO)

genetic disease (ISO)

intellectual disability (ISO)

myeloid leukemia associated with Down Syndrome (ISO)

primary cutaneous T-cell non-Hodgkin lymphoma (ISO)

Retinal Neovascularization (ISO)

skin melanoma (ISO)

skin squamous cell carcinoma (ISO)

T-cell acute lymphoblastic leukemia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cardiac muscle cell development (IEA)

cardiac muscle cell differentiation (IEA)

chromatin looping (IEA)

chromatin organization (IEA)

DNA methylation-dependent constitutive heterochromatin formation (IEA)

epigenetic regulation of gene expression (IEA)

gene expression (IEA)

genomic imprinting (IEA)

heart development (IEA)

in utero embryonic development (IEA)

mitochondrion organization (IEA)

negative regulation of cell population proliferation (IEA)

negative regulation of DNA-templated transcription (IEA)

negative regulation of gene expression (IEA)

negative regulation of gene expression via chromosomal CpG island methylation (IEA)

negative regulation of transcription by RNA polymerase II (IEA)

positive regulation of DNA-templated transcription (IEA)

positive regulation of gene expression (IEA)

positive regulation of miRNA transcription (ISO)

positive regulation of transcription by RNA polymerase II (IEA)

protein localization to chromosome, centromeric region (IEA)

regulation of DNA-templated transcription (IEA)

regulation of gene expression (IEA)

regulation of transcription by RNA polymerase II (IEA)

Cellular Component

chromosome, centromeric region (IEA)

condensed chromosome (IEA)

dense fibrillar component (ISO)

granular component (ISO)

male germ cell nucleus (IEA)

nucleolus (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

chromatin binding (IEA)

chromatin insulator sequence binding (IEA)

chromatin loop anchoring activity (IEA)

cis-regulatory region sequence-specific DNA binding (IEA)

DNA binding (IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor binding (ISO)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

transcription cis-regulatory region binding (IEA)

transcription coregulator binding (IEA)

zinc ion binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CTCF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	59,806,753 - 59,889,534 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	59,806,551 - 59,880,049 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	22,559,050 - 22,640,771 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CTCF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	67,562,526 - 67,639,185 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	67,562,467 - 67,639,177 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	67,596,429 - 67,673,088 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	66,153,965 - 66,230,589 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	66,153,963 - 66,230,580	NCBI
Celera	16	52,104,229 - 52,181,578 (+)	NCBI		Celera
Cytogenetic Map	16	q22.1	NCBI
HuRef	16	53,469,579 - 53,546,004 (+)	NCBI		HuRef
CHM1_1	16	69,003,654 - 69,080,781 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	73,357,293 - 73,433,954 (+)	NCBI		T2T-CHM13v2.0

Ctcf
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	106,351,135 - 106,409,554 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	106,363,200 - 106,409,554 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	105,636,474 - 105,682,922 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	105,636,568 - 105,682,922 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	108,160,438 - 108,206,822 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	108,525,670 - 108,572,051 (+)	NCBI		MGSCv36	mm8
Celera	8	109,860,822 - 109,907,765 (+)	NCBI		Celera
Cytogenetic Map	8	D3	NCBI
cM Map	8	53.04	NCBI

Ctcf
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	50,431,478 - 50,481,013 (+)	NCBI		GRCr8
mRatBN7.2	19	33,521,726 - 33,571,124 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	33,529,319 - 33,571,123 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	40,337,528 - 40,386,695 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	40,990,859 - 41,040,027 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	43,288,547 - 43,337,784 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	37,600,151 - 37,649,674 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	37,600,148 - 37,649,673 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	48,467,547 - 48,516,378 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	35,461,942 - 35,514,934 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	35,466,822 - 35,519,814 (+)	NCBI
Celera	19	32,950,156 - 32,999,072 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

Ctcf
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	9,042,524 - 9,064,927 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955484	9,041,226 - 9,092,924 (-)	NCBI	ChiLan1.0	ChiLan1.0

CTCF
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	77,090,712 - 77,167,572 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	83,003,393 - 83,080,048 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	47,906,503 - 47,983,271 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	67,302,952 - 67,372,041 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	67,302,952 - 67,372,041 (+)	Ensembl	panpan1.1		panPan2

CTCF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	81,808,512 - 81,863,811 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	81,809,393 - 81,858,655 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	81,798,220 - 81,853,471 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	82,243,654 - 82,298,999 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	82,243,653 - 82,298,955 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	82,069,946 - 82,125,241 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	81,751,450 - 81,806,353 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	82,394,029 - 82,449,348 (-)	NCBI		UU_Cfam_GSD_1.0

Ctcf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	41,557,377 - 41,601,957 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	17,987,156 - 18,031,760 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	17,987,137 - 18,031,733 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CTCF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	28,195,647 - 28,261,009 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	28,188,002 - 28,261,009 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	25,467,984 - 25,508,432 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Ctcf
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	18,706,663 - 18,760,203 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	18,705,017 - 18,760,345 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CTCF
1042 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007993953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007993954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007993955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000001940 ⟹ ENSCSAP00000000275

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	5	59,806,551 - 59,880,049 (-)	Ensembl

RefSeq Acc Id:

XM_007993953 ⟹ XP_007992144

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	5	59,806,753 - 59,889,534 (-)	NCBI
Vero_WHO_p1.0	NW_023666047	22,559,050 - 22,639,574 (-)	NCBI

Sequence:

show sequence

GCTGCCCTGCGCCAACCCCTCCCCTCACCTTTCCTCCCCCGCCCTCTACTCGCCGCCCGGCCGG
CCCCCCCACCCGTCCCTTCCCTTATCAGCACCCGCGGCCCCGGCAGCGCCGACGCAGGCGCACT
GCACCGCGCCGCCGCCATTTTGTGTCCGAGCCTGTGGAGCGATTAAACCGTGCGCGGAGCTGCT
TCTTTGGCGGCAGCGGCGGCGGCGGTAGCCGGTGCGGACGCGCGGAGCTCGCCGGAGACGCCGG
GTGGCCGGAGCCGTGGAGCGGCGGCGGAGCGGGCGCCGCGGGGGGTGTGGCGCGGAGAATGATT
ACGGACCTGAAGCCAAAGAACAAGATGCACTAGTGGATGGATTGCTGACCAGGGGCTTGAGAGC
TGGATTCTGTTTTCCCTCCTCAAACTGACTTTGCAGCCACGGAGAGGCAGGGGAAATGGAAGGT
GAGGCGGTCGAAGCCATTGTGGAGGAGTCCGAAACTTTTATTAAAGGAAAGGAGAGAAAGACTT
ACCAGAGACGCCGGGAAGGGGGCCAGGAAGAAGATACCTGCCACTTACCCCAGAACCAGACGGA
TGGGGGTGAGGTGGTCCAGGATGTCAACAGCAGTGTACAGATGGTAATGATGGAACAGCTGGAC
CCCACCCTTCTTCAGATGAAGACTGAAGTAATGGAGGGCACAGTGGCTCCAGAAGCAGAGGCTG
CTGTGGACGATACCCAGATTATAACTTTACAGGTTGTAAATATGGAGGAACAGCCCATAAACAT
AGGAGAGCTTCAACTTGTTCAAGTACCTGTTCCTGTGACTGTACCTGTTGCTACCACTTCCGTA
GAAGAACTTCAGGGGGCTTATGAAAATGAAGTGTCTAAAGAGGGCCTTGCAGAAAGTGAACCCA
TGATATGCCACACCCTACCCTTGCCTGAAGGGTTTCAGGTGGTTAAAGTGGGGGCCAATGGAGA
GGTGGAGACACTAGAACAAGGGGAACTTCCACCCCAGGAAGATCCTAGTTGGCAAAAAGACCCA
GACTATCAGCCACCAGCCAAAAAAACAAAGAAAACCAAAAAGAGCAAACTGCGTTATACAGAGG
AGGGCAAAGATGTAGATGTGTCTGTCTACGATTTTGAGGAAGAACAGCAGGAGGGTCTGCTATC
AGAGGTTAATGCAGAGAAAGTGGTTGGTAATATGAAGCCTCCAAAGCCAACAAAAATTAAAAAG
AAAGGTGTAAAGAAGACATTCCAGTGTGAGCTTTGCAGTTACACGTGTCCACGGCGTTCAAATT
TGGATCGTCACATGAAAAGCCACACTGATGAGAGACCACACAAGTGCCATCTCTGTGGCAGGGC
ATTCAGAACAGTCACCCTCCTGAGGAATCACCTTAACACACACACAGGTACTCGTCCTCACAAG
TGCCCAGACTGCGACATGGCCTTTGTGACCAGTGGAGAATTGGTTCGGCATCGTCGTTACAAAC
ACACCCACGAGAAGCCATTCAAGTGTTCCATGTGCGATTACGCCAGTGTAGAAGTCAGCAAATT
AAAACGTCACATTCGCTCTCATACTGGAGAGCGTCCATTTCAGTGCAGTTTGTGCAGTTATGCC
AGCAGGGACACATACAAGCTGAAAAGGCACATGAGAACCCATTCAGGAGAAAAGCCTTATGAAT
GTTATATTTGTCATGCTCGGTTTACCCAAAGTGGTACCATGAAGATGCACATTTTACAGAAGCA
CACAGAAAATGTGGCCAAATTTCACTGTCCCCACTGTGACACAGTCATAGCCCGAAAAAGTGAT
TTGGGTGTCCACTTGCGAAAGCAGCATTCCTATATTGAGCAAGGCAAGAAATGCCGTTACTGTG
ATGCTGTGTTTCATGAGCGCTATGCCCTCATCCAGCATCAGAAGTCACACAAGAATGAGAAGCG
CTTTAAGTGCGACCAGTGTGATTACGCTTGTAGACAGGAGAGGCACATGATCATGCACAAGCGC
ACCCATACCGGGGAGAAGCCTTATGCCTGCAGCCACTGCGATAAGACCTTCCGCCAGAAGCAGC
TTCTCGACATGCACTTCAAGCGTTATCACGACCCCAACTTTGTCCCTGCGGCATTTGTCTGTTC
TAAGTGTGGGAAAACATTTACACGTCGGAATACCATGGCAAGACATGCTGATAATTGTGCTGGC
CCAGATGGTGTAGAGGGGGAGAATGGAGGAGAAACGAAGAAGAGTAAACGTGGAAGAAAAAGAA
AGATGCGCTCTAAGAAAGAAGATTCCTCTGACAGTGAAAATGCTGAACCAGATCTGGACGACAA
TGAGGATGAGGAGGACCCTGCCGTAGAAATTGAACCCGAGCCAGAGCCTCAGCCTGTGACCCCA
GCCCCACCACCCGCCAAGAAGCGGAGAGGACGACCCCCTGGCAGAACCAACCAGCCCAAACAGA
ACCAGCCAACAGCTATCATTCAGGTTGAAGACCAGAATACAGGTGCAATTGAAAACATTATAGT
TGAAGTAAAAAAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGAGCCCCAGCCAGCT
GCCACAGACGCCCCCAACGGAGACCTCACGCCCGAGATGATCCTCAGCATGATGGACCGGTGAT
GGCGGAGCCTTGTGTGTCGCCAGGACTGCTCTGGGCTGTGTTTAAACGGCCCGCATCTTAATTT
TTCTCCCTTCTTTCTTTTTTTGGCTTTGGGAAAAGCATCATTTTACCAAACATACCAAGAACGA
AAACTTCAAGGATGATGTTAGAAAAAAATGTGATTTAACTAGAACTTGCTGTCTGATGTTAGCA
AATCATGGAATATTCTGAGTCCCCGAGGGTTTACTGTGAAGTGCTGAGGACAGTGTTGACGACT
AACTCGTTTTCCTAGATGGAAACGGAGACATTGACCCCTCCCTCCATGTGGTAAACCACTCCAG
AATGGCCACCAGGCTTCCCAGAGTTCTATGGTCTTCTTCCCAAGAGAGTTTTTAATTGTAAATG
CATACTTGGGAAGGACTTAGACTTTTAAACTGTTTTTTGCTTTTGCTTTTCCCTGACTCCCTTT
GCTTGGAGTCAGCTGCACACCAGTAGTATGGCATGCTACGATCAGGTTCTGTCCTGAAAGCTTT
GCCTCTTTCTTGGCAAAGTTTCTGGTATGGTCAAGCTTGTAAATAACTTTTTTTACATTTTAAT
CTTTTCCATTAATTAAGAGGTTGAAAAGAAGTGCAGTGTAAGAAAACCCAGCATTTTAATTACT
TGCAAATTAAGTTACCACAGACTCTGTAGTGTGTAAATGTTGACAAGGAATTGGATCACAATCA
TGTAGCAGAATGGCACCCAGACCACTGCCCACCAGTGACGGACACCCACGTGGCAGATCATGAT
TTCCAGCCCACGGAGCCAGCATTTGAACCTTGTACAATTAACTTTCAGTTATGATTTCCCATCA
ACATTTTCTTTGCCCTGTTTGTAGCTGATTGTTGTGTTTTATAAATCTTCTGTTAAAGCAGAAG
GGTGATTATGAGTGGGTCACAGCAGCCCTTACAAGCTGGGCCAGAAAATTTCACTAGGTCAGTA
ATTTAAACTTTGGATCTTCAAAAAATAATAATGTGAAACAAAACCAACTAAAAAGTGATTCTTG
CACATGAACTGTCACATGTTTAAAAATGTGTTTTTTAGAGAGCCTCAGTCTTACTGATTTCAAA
CACTTTTCTTCTGTGTATTGCTTTTAAGAGAGCCATCAGTTAGCTATCAGACTCTAGGTTGATG
CATTTTGTACTTAGCTGTACTGTGTGATATTTTTCATTATTTTAGGACGCCAACATGAGACCTG
TAATAAAATATGTAATGGGGTTGAAAGCTGGGGAGGAGGATCTACTGCTGTACAGCTAATAAAT
CATAACGGATTAACAAGTGCT

hide sequence

RefSeq Acc Id:

XM_007993954 ⟹ XP_007992145

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	5	59,806,754 - 59,879,933 (-)	NCBI
Vero_WHO_p1.0	NW_023666047	22,559,051 - 22,640,771 (-)	NCBI

Sequence:

show sequence

GGCAGGGGAAATGGAAGGTGAGGCGGTCGAAGCCATTGTGGAGGAGTCCGAAACTTTTATTAAA
GGAAAGGAGAGAAAGACTTACCAGAGACGCCGGGAAGGGGGCCAGGAAGAAGATACCTGCCACT
TACCCCAGAACCAGACGGATGGGGGTGAGGTGGTCCAGGATGTCAACAGCAGTGTACAGATGGT
AATGATGGAACAGCTGGACCCCACCCTTCTTCAGATGAAGACTGAAGTAATGGAGGGCACAGTG
GCTCCAGAAGCAGAGGCTGCTGTGGACGATACCCAGATTATAACTTTACAGGTTGTAAATATGG
AGGAACAGCCCATAAACATAGGAGAGCTTCAACTTGTTCAAGTACCTGTTCCTGTGACTGTACC
TGTTGCTACCACTTCCGTAGAAGAACTTCAGGGGGCTTATGAAAATGAAGTGTCTAAAGAGGGC
CTTGCAGAAAGTGAACCCATGATATGCCACACCCTACCCTTGCCTGAAGGGTTTCAGGTGGTTA
AAGTGGGGGCCAATGGAGAGGTGGAGACACTAGAACAAGGGGAACTTCCACCCCAGGAAGATCC
TAGTTGGCAAAAAGACCCAGACTATCAGCCACCAGCCAAAAAAACAAAGAAAACCAAAAAGAGC
AAACTGCGTTATACAGAGGAGGGCAAAGATGTAGATGTGTCTGTCTACGATTTTGAGGAAGAAC
AGCAGGAGGGTCTGCTATCAGAGGTTAATGCAGAGAAAGTGGTTGGTAATATGAAGCCTCCAAA
GCCAACAAAAATTAAAAAGAAAGGTGTAAAGAAGACATTCCAGTGTGAGCTTTGCAGTTACACG
TGTCCACGGCGTTCAAATTTGGATCGTCACATGAAAAGCCACACTGATGAGAGACCACACAAGT
GCCATCTCTGTGGCAGGGCATTCAGAACAGTCACCCTCCTGAGGAATCACCTTAACACACACAC
AGGTACTCGTCCTCACAAGTGCCCAGACTGCGACATGGCCTTTGTGACCAGTGGAGAATTGGTT
CGGCATCGTCGTTACAAACACACCCACGAGAAGCCATTCAAGTGTTCCATGTGCGATTACGCCA
GTGTAGAAGTCAGCAAATTAAAACGTCACATTCGCTCTCATACTGGAGAGCGTCCATTTCAGTG
CAGTTTGTGCAGTTATGCCAGCAGGGACACATACAAGCTGAAAAGGCACATGAGAACCCATTCA
GGAGAAAAGCCTTATGAATGTTATATTTGTCATGCTCGGTTTACCCAAAGTGGTACCATGAAGA
TGCACATTTTACAGAAGCACACAGAAAATGTGGCCAAATTTCACTGTCCCCACTGTGACACAGT
CATAGCCCGAAAAAGTGATTTGGGTGTCCACTTGCGAAAGCAGCATTCCTATATTGAGCAAGGC
AAGAAATGCCGTTACTGTGATGCTGTGTTTCATGAGCGCTATGCCCTCATCCAGCATCAGAAGT
CACACAAGAATGAGAAGCGCTTTAAGTGCGACCAGTGTGATTACGCTTGTAGACAGGAGAGGCA
CATGATCATGCACAAGCGCACCCATACCGGGGAGAAGCCTTATGCCTGCAGCCACTGCGATAAG
ACCTTCCGCCAGAAGCAGCTTCTCGACATGCACTTCAAGCGTTATCACGACCCCAACTTTGTCC
CTGCGGCATTTGTCTGTTCTAAGTGTGGGAAAACATTTACACGTCGGAATACCATGGCAAGACA
TGCTGATAATTGTGCTGGCCCAGATGGTGTAGAGGGGGAGAATGGAGGAGAAACGAAGAAGAGT
AAACGTGGAAGAAAAAGAAAGATGCGCTCTAAGAAAGAAGATTCCTCTGACAGTGAAAATGCTG
AACCAGATCTGGACGACAATGAGGATGAGGAGGACCCTGCCGTAGAAATTGAACCCGAGCCAGA
GCCTCAGCCTGTGACCCCAGCCCCACCACCCGCCAAGAAGCGGAGAGGACGACCCCCTGGCAGA
ACCAACCAGCCCAAACAGAACCAGCCTATCATTCAGGTTGAAGACCAGAATACAGGTGCAATTG
AAAACATTATAGTTGAAGTAAAAAAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGA
GCCCCAGCCAGCTGCCACAGACGCCCCCAACGGAGACCTCACGCCCGAGATGATCCTCAGCATG
ATGGACCGGTGATGGCGGAGCCTTGTGTGTCGCCAGGACTGCTCTGGGCTGTGTTTAAACGGCC
CGCATCTTAATTTTTCTCCCTTCTTTCTTTTTTTGGCTTTGGGAAAAGCATCATTTTACCAAAC
ATACCAAGAACGAAAACTTCAAGGATGATGTTAGAAAAAAATGTGATTTAACTAGAACTTGCTG
TCTGATGTTAGCAAATCATGGAATATTCTGAGTCCCCGAGGGTTTACTGTGAAGTGCTGAGGAC
AGTGTTGACGACTAACTCGTTTTCCTAGATGGAAACGGAGACATTGACCCCTCCCTCCATGTGG
TAAACCACTCCAGAATGGCCACCAGGCTTCCCAGAGTTCTATGGTCTTCTTCCCAAGAGAGTTT
TTAATTGTAAATGCATACTTGGGAAGGACTTAGACTTTTAAACTGTTTTTTGCTTTTGCTTTTC
CCTGACTCCCTTTGCTTGGAGTCAGCTGCACACCAGTAGTATGGCATGCTACGATCAGGTTCTG
TCCTGAAAGCTTTGCCTCTTTCTTGGCAAAGTTTCTGGTATGGTCAAGCTTGTAAATAACTTTT
TTTACATTTTAATCTTTTCCATTAATTAAGAGGTTGAAAAGAAGTGCAGTGTAAGAAAACCCAG
CATTTTAATTACTTGCAAATTAAGTTACCACAGACTCTGTAGTGTGTAAATGTTGACAAGGAAT
TGGATCACAATCATGTAGCAGAATGGCACCCAGACCACTGCCCACCAGTGACGGACACCCACGT
GGCAGATCATGATTTCCAGCCCACGGAGCCAGCATTTGAACCTTGTACAATTAACTTTCAGTTA
TGATTTCCCATCAACATTTTCTTTGCCCTGTTTGTAGCTGATTGTTGTGTTTTATAAATCTTCT
GTTAAAGCAGAAGGGTGATTATGAGTGGGTCACAGCAGCCCTTACAAGCTGGGCCAGAAAATTT
CACTAGGTCAGTAATTTAAACTTTGGATCTTCAAAAAATAATAATGTGAAACAAAACCAACTAA
AAAGTGATTCTTGCACATGAACTGTCACATGTTTAAAAATGTGTTTTTTAGAGAGCCTCAGTCT
TACTGATTTCAAACACTTTTCTTCTGTGTATTGCTTTTAAGAGAGCCATCAGTTAGCTATCAGA
CTCTAGGTTGATGCATTTTGTACTTAGCTGTACTGTGTGATATTTTTCATTATTTTAGGACGCC
AACATGAGACCTGTAATAAAATATGTAATGGGGTTGAAAGCTGGGGAGGAGGATCTACTGCTGT
ACAGCTAATAAATCATAACGGATTAACAAGTGC

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Protein Sequences


Protein RefSeqs	XP_007992144	(Get FASTA)	NCBI Sequence Viewer
	XP_007992145	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000000275
	ENSCSAP00000000275.1

RefSeq Acc Id:	XP_007992144 ⟸ XM_007993953
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9QV86 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007992145 ⟸ XM_007993954
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSCSAP00000000275 ⟸ ENSCSAT00000001940

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000003911	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000001940.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
KEGG Report	csab:103233273	UniProtKB/TrEMBL
NCBI Gene	CTCF	ENTREZGENE
PANTHER	CCCTC-BINDING FACTOR LIKE	UniProtKB/TrEMBL
	KRAB AND ZINC FINGER DOMAIN-CONTAINING	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0D9QV86	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-12-03	CTCF	CCCTC-binding factor	LOC103233542	atherin-like	Data merged from RGD:18560394	737654	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM