SLC18A3 (solute carrier family 18 member A3) - Rat Genome Database

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Gene: SLC18A3 (solute carrier family 18 member A3) Chlorocebus sabaeus
Analyze
Symbol: SLC18A3
Name: solute carrier family 18 member A3
RGD ID: 18405355
Description: ENCODES a protein that exhibits acetylcholine transmembrane transporter activity (ortholog); INVOLVED IN acetylcholine transport (ortholog); neurotransmitter loading into synaptic vesicle (ortholog); positive regulation of acetylcholine secretion, neurotransmission (ortholog); PARTICIPATES IN acetylcholine signaling pathway via muscarinic acetylcholine receptor; acetylcholine signaling pathway via nicotinic acetylcholine receptor; ASSOCIATED WITH Alzheimer's disease (ortholog); asthma (ortholog); Binge Drinking (ortholog); FOUND IN AP-1 adaptor complex (ortholog); AP-2 adaptor complex (ortholog); axon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: vesicular acetylcholine transporter
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1942,216,187 - 42,219,665 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl942,216,568 - 42,218,166 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660481,961,084 - 1,963,669 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC18A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1942,216,187 - 42,219,665 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl942,216,568 - 42,218,166 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660481,961,084 - 1,963,669 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SLC18A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381049,610,310 - 49,612,720 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1049,610,310 - 49,612,720 (+)EnsemblGRCh38hg38GRCh38
GRCh371050,818,356 - 50,820,766 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361050,488,353 - 50,490,772 (+)NCBINCBI36Build 36hg18NCBI36
Build 341050,488,352 - 50,490,771NCBI
Celera1044,404,433 - 44,406,852 (+)NCBICelera
Cytogenetic Map10q11.23NCBI
HuRef1045,083,115 - 45,085,534 (+)NCBIHuRef
CHM1_11051,100,431 - 51,102,850 (+)NCBICHM1_1
T2T-CHM13v2.01050,459,116 - 50,461,526 (+)NCBIT2T-CHM13v2.0
Slc18a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391432,184,394 - 32,186,807 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1432,184,395 - 32,186,807 (-)EnsemblGRCm39 Ensembl
GRCm381432,462,437 - 32,464,850 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1432,462,438 - 32,464,850 (-)EnsemblGRCm38mm10GRCm38
MGSCv371433,275,623 - 33,278,036 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361431,291,446 - 31,293,859 (-)NCBIMGSCv36mm8
Celera1428,720,138 - 28,722,551 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.4NCBI
Slc18a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8167,719,953 - 7,722,814 (-)NCBIGRCr8
mRatBN7.2167,713,630 - 7,716,491 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx167,725,590 - 7,728,451 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0168,870,530 - 8,873,391 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0167,724,418 - 7,727,279 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0168,682,668 - 8,685,529 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl168,682,669 - 8,685,529 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01610,648,850 - 10,651,711 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4167,969,738 - 7,972,599 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1167,969,739 - 7,972,597 (-)NCBI
Celera167,484,278 - 7,487,139 (+)NCBICelera
Cytogenetic Map16p16NCBI
Slc18a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955556696,974 - 698,566 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955556696,779 - 698,869 (-)NCBIChiLan1.0ChiLan1.0
SLC18A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2861,878,629 - 61,881,174 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11061,883,949 - 61,886,497 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01044,630,006 - 44,632,419 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SLC18A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,476,873 - 1,478,538 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,476,774 - 1,478,505 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,712,112 - 1,713,723 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0281,654,300 - 1,655,917 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl281,654,155 - 1,655,892 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1281,451,550 - 1,453,161 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0281,488,646 - 1,490,263 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0281,620,537 - 1,622,154 (+)NCBIUU_Cfam_GSD_1.0
Slc18a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721379,501,080 - 79,503,962 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936728704,290 - 705,885 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936728703,688 - 706,317 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC18A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1490,113,844 - 90,115,430 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11490,113,534 - 90,115,813 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21498,021,703 - 98,023,442 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Slc18a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624928403,503 - 405,095 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624928403,114 - 405,560 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC18A3
56 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
56 36 17 33 33 40 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007962567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000018510   ⟹   ENSCSAP00000017962
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl942,216,568 - 42,218,166 (-)Ensembl
RefSeq Acc Id: XM_007962567   ⟹   XP_007960758
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1942,216,187 - 42,219,665 (-)NCBI
Vero_WHO_p1.0NW_0236660481,961,084 - 1,963,669 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007960758 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017962
  ENSCSAP00000017962.1
RefSeq Acc Id: XP_007960758   ⟸   XM_007962567
- UniProtKB: A0A0D9SAS3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000017962   ⟸   ENSCSAT00000018510


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018420 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018510.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  MFS_Vesicular_Transporter UniProtKB/TrEMBL
KEGG Report csab:103215828 UniProtKB/TrEMBL
NCBI Gene SLC18A3 ENTREZGENE
PANTHER PTHR23506 UniProtKB/TrEMBL
  VESICULAR ACETYLCHOLINE TRANSPORTER UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A0D9SAS3 ENTREZGENE, UniProtKB/TrEMBL