LOC103221781 (class I histocompatibility antigen, Gogo-B*0101 alpha chain-like) - Rat Genome Database

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Gene: LOC103221781 (class I histocompatibility antigen, Gogo-B*0101 alpha chain-like) Chlorocebus sabaeus
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Symbol: LOC103221781
Name: class I histocompatibility antigen, Gogo-B*0101 alpha chain-like
RGD ID: 18346849
Description: ENCODES a protein that exhibits peptide antigen binding (inferred); signaling receptor binding (inferred); INVOLVED IN antigen processing and presentation (inferred); antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent (inferred); antigen processing and presentation of endogenous peptide antigen via MHC class Ib (inferred); FOUND IN cell surface (inferred); early endosome membrane (inferred); ER to Golgi transport vesicle membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Chsa-B; class I histocompatibility antigen, Gogo-B*0103 alpha chain-like; MHC IB antigen
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,916,562 - 40,919,866 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666130342,791 - 346,125 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


RefSeq Acc Id: XM_037995525   ⟹   XP_037851453
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666130342,791 - 346,080 (-)NCBI
RefSeq Acc Id: XM_037995526   ⟹   XP_037851454
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666130342,791 - 346,125 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037851453 (Get FASTA)   NCBI Sequence Viewer  
  XP_037851454 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein APD25598 (Get FASTA)   NCBI Sequence Viewer  
  APD25599 (Get FASTA)   NCBI Sequence Viewer  
  CZT87606 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004699.1
RefSeq Acc Id: XP_037851454   ⟸   XM_037995526
- Peptide Label: isoform X2
- UniProtKB: A0A1J0MKR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037851453   ⟸   XM_037995525
- Peptide Label: isoform X1
- UniProtKB: A0A1J0MKR8 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008447 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006497.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.30.500.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_class-I_related UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_I_a_a1/a2 UniProtKB/TrEMBL
  MHC_I_a_C UniProtKB/TrEMBL
NCBI Gene LOC103221781 ENTREZGENE
PANTHER HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B ALPHA CHAIN UniProtKB/TrEMBL
  MHC CLASS I-RELATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_I UniProtKB/TrEMBL
  MHC_I_C UniProtKB/TrEMBL
PRINTS MHCCLASSI UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF54452 UniProtKB/TrEMBL
UniProt A0A0D9R7W0_CHLSB UniProtKB/TrEMBL
  A0A1J0MKR8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103221781  class I histocompatibility antigen, Gogo-B*0101 alpha chain-like  LOC103221781  class I histocompatibility antigen, Gogo-B*0103 alpha chain-like  Symbol and/or name change 5135510 APPROVED