AC091096.1 (novel transcript) - Rat Genome Database

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Gene: AC091096.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC091096.1
Name: novel transcript
RGD ID: 16559855
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: LOC102724710; uncharacterized LOC102724710
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38892,565,443 - 92,655,494 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl892,460,539 - 92,655,576 (-)EnsemblGRCh38hg38GRCh38
GRCh37893,577,671 - 93,667,722 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map8q22.1NCBI
CHM1_1893,617,776 - 93,707,816 (-)NCBICHM1_1
T2T-CHM13v2.0893,690,320 - 93,780,409 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000053602] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:226452-145068712)x3 copy number gain See cases [RCV000142858] Chr8:226452..145068712 [GRCh38]
Chr8:176452..146294098 [GRCh37]
Chr8:166452..146264902 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:77480050-145068712)x3 copy number gain See cases [RCV000139036] Chr8:77480050..145068712 [GRCh38]
Chr8:78392286..146294098 [GRCh37]
Chr8:78554841..146264902 [NCBI36]
Chr8:8q21.13-24.3		 pathogenic
GRCh38/hg38 8q13.1-22.1(chr8:66171669-93505509)x3 copy number gain See cases [RCV000137050] Chr8:66171669..93505509 [GRCh38]
Chr8:67083904..94517737 [GRCh37]
Chr8:67246458..94586913 [NCBI36]
Chr8:8q13.1-22.1		 pathogenic
GRCh38/hg38 8q21.2-24.3(chr8:85765999-145070385)x3 copy number gain See cases [RCV000143659] Chr8:85765999..145070385 [GRCh38]
Chr8:86778228..146295771 [GRCh37]
Chr8:86863079..146266575 [NCBI36]
Chr8:8q21.2-24.3		 pathogenic
GRCh38/hg38 8q21.3-24.23(chr8:86300584-137022587)x3 copy number gain See cases [RCV000135621] Chr8:86300584..137022587 [GRCh38]
Chr8:87312813..138034830 [GRCh37]
Chr8:87381929..138104012 [NCBI36]
Chr8:8q21.3-24.23		 pathogenic|likely pathogenic
GRCh38/hg38 8p21.3-q24.3(chr8:21291522-145070385)x3 copy number gain See cases [RCV000142021] Chr8:21291522..145070385 [GRCh38]
Chr8:21149033..146295771 [GRCh37]
Chr8:21193313..146266575 [NCBI36]
Chr8:8p21.3-q24.3		 pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:208048-145070385)x3 copy number gain See cases [RCV000141808] Chr8:208048..145070385 [GRCh38]
Chr8:158048..146295771 [GRCh37]
Chr8:148048..146266575 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh38/hg38 8q21.3-22.1(chr8:92287062-95786443)x1 copy number loss See cases [RCV000054277] Chr8:92287062..95786443 [GRCh38]
Chr8:93299290..96798671 [GRCh37]
Chr8:93368466..96867847 [NCBI36]
Chr8:8q21.3-22.1		 pathogenic
GRCh38/hg38 8q21.3-24.3(chr8:87931152-145068712)x3 copy number gain See cases [RCV000138551] Chr8:87931152..145068712 [GRCh38]
Chr8:88943380..146294098 [GRCh37]
Chr8:89012496..146264902 [NCBI36]
Chr8:8q21.3-24.3		 pathogenic
GRCh38/hg38 8q11.1-24.3(chr8:46031340-139285494)x3 copy number gain See cases [RCV000139539] Chr8:46031340..139285494 [GRCh38]
Chr8:46942962..140297737 [GRCh37]
Chr8:47062127..140366919 [NCBI36]
Chr8:8q11.1-24.3		 pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:78614077-145054634)x3 copy number gain See cases [RCV000142597] Chr8:78614077..145054634 [GRCh38]
Chr8:79526312..146280020 [GRCh37]
Chr8:79688867..146250824 [NCBI36]
Chr8:8q21.13-24.3		 pathogenic
GRCh38/hg38 8q21.3-22.1(chr8:92283179-95786443)x1 copy number loss See cases [RCV000054265] Chr8:92283179..95786443 [GRCh38]
Chr8:93295407..96798671 [GRCh37]
Chr8:93364583..96867847 [NCBI36]
Chr8:8q21.3-22.1		 pathogenic
GRCh38/hg38 8q21.3-22.1(chr8:90940996-94538343)x1 copy number loss See cases [RCV000054263] Chr8:90940996..94538343 [GRCh38]
Chr8:91953224..95550571 [GRCh37]
Chr8:92022400..95619747 [NCBI36]
Chr8:8q21.3-22.1		 pathogenic
GRCh38/hg38 8q21.13-22.1(chr8:78672463-95366868)x1 copy number loss See cases [RCV000054262] Chr8:78672463..95366868 [GRCh38]
Chr8:79584698..96379096 [GRCh37]
Chr8:79747253..96448272 [NCBI36]
Chr8:8q21.13-22.1		 pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145049449)x3 copy number gain See cases [RCV000051206] Chr8:241530..145049449 [GRCh38]
Chr8:191530..146274835 [GRCh37]
Chr8:181530..146245639 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241605-145054781)x3 copy number gain See cases [RCV000138643] Chr8:241605..145054781 [GRCh38]
Chr8:191605..146280167 [GRCh37]
Chr8:181605..146250971 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:168
Count of miRNA genes:162
Interacting mature miRNAs:166
Transcripts:ENST00000408245, ENST00000523284
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
41 261 121 101 537 159 193 1 7 36 5 60 228 311 1 572 30 444 176 3

Sequence


Ensembl Acc Id: ENST00000523284
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,565,443 - 92,655,578 (-)Ensembl
Ensembl Acc Id: ENST00000648652
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,460,539 - 92,655,569 (-)Ensembl
Ensembl Acc Id: ENST00000653143
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,565,443 - 92,655,578 (-)Ensembl
Ensembl Acc Id: ENST00000665958
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,621,106 - 92,655,569 (-)Ensembl
Ensembl Acc Id: ENST00000744168
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,463,003 - 92,628,183 (-)Ensembl
Ensembl Acc Id: ENST00000744169
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,471,541 - 92,628,250 (-)Ensembl
Ensembl Acc Id: ENST00000744170
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,565,443 - 92,655,569 (-)Ensembl
Ensembl Acc Id: ENST00000744171
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,565,450 - 92,655,565 (-)Ensembl
Ensembl Acc Id: ENST00000744172
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,565,451 - 92,655,565 (-)Ensembl
Ensembl Acc Id: ENST00000744173
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,565,455 - 92,634,995 (-)Ensembl
Ensembl Acc Id: ENST00000744174
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,565,450 - 92,628,265 (-)Ensembl
Ensembl Acc Id: ENST00000744175
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,565,455 - 92,610,873 (-)Ensembl
Ensembl Acc Id: ENST00000744176
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,462,657 - 92,499,854 (-)Ensembl
Ensembl Acc Id: ENST00000744177
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,463,002 - 92,499,838 (-)Ensembl
Ensembl Acc Id: ENST00000744178
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,462,653 - 92,498,892 (-)Ensembl
Ensembl Acc Id: ENST00000744179
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,462,653 - 92,498,785 (-)Ensembl
Ensembl Acc Id: ENST00000744180
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,485,731 - 92,509,821 (-)Ensembl
Ensembl Acc Id: ENST00000744181
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,462,648 - 92,475,122 (-)Ensembl
Ensembl Acc Id: ENST00000744182
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,462,657 - 92,475,069 (-)Ensembl
Ensembl Acc Id: ENST00000744183
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,500,580 - 92,509,861 (-)Ensembl
Ensembl Acc Id: ENST00000744184
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,647,977 - 92,655,583 (-)Ensembl
Ensembl Acc Id: ENST00000744185
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,647,977 - 92,655,569 (-)Ensembl
Ensembl Acc Id: ENST00000744186
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,647,984 - 92,653,977 (-)Ensembl
Ensembl Acc Id: ENST00000744187
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,462,657 - 92,466,945 (-)Ensembl
RefSeq Acc Id: NR_125827
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38892,565,443 - 92,655,494 (-)NCBI
T2T-CHM13v2.0893,690,320 - 93,780,409 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC AC091096.1 COSMIC
Ensembl Genes ENSG00000253634 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000523284 ENTREZGENE
GTEx ENSG00000253634 GTEx
Human Proteome Map AC091096.1 Human Proteome Map
NCBI Gene LOC102724710 ENTREZGENE
RNAcentral URS00007E4A3E RNACentral
  URS0000DB8EF7 RNACentral
  URS0000EEC91C RNACentral
  URS0000EF0E85 RNACentral
  URS0000EF6DAB RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC091096.1  novel transcript  LOC102724710  uncharacterized LOC102724710  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC102724710  uncharacterized LOC102724710  AC091096.1  novel transcript  Symbol and/or name change 5135510 APPROVED