Mir551b (microRNA 551b) - Rat Genome Database

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Gene: Mir551b (microRNA 551b) Mus musculus
Analyze
Symbol: Mir551b
Name: microRNA 551b
RGD ID: 1625984
MGI Page MGI
Description: Acts upstream of or within long-term synaptic potentiation. Orthologous to human MIR551B (microRNA 551b).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-55; mir-551b; Mirn5; Mirn551b
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39329,470,972 - 29,471,069 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl329,470,972 - 29,471,069 (+)EnsemblGRCm39 Ensembl
GRCm38329,416,823 - 29,416,920 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl329,416,823 - 29,416,920 (+)EnsemblGRCm38mm10GRCm38
MGSCv37329,315,745 - 29,315,842 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera329,342,642 - 29,342,739 (+)NCBICelera
Cytogenetic Map3A3NCBI
cM Map312.58NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:16582102   PMID:17604727   PMID:20215419   PMID:20413612   PMID:21037258   PMID:21267068   PMID:25858512  


Genomics

Comparative Map Data
Mir551b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39329,470,972 - 29,471,069 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl329,470,972 - 29,471,069 (+)EnsemblGRCm39 Ensembl
GRCm38329,416,823 - 29,416,920 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl329,416,823 - 29,416,920 (+)EnsemblGRCm38mm10GRCm38
MGSCv37329,315,745 - 29,315,842 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera329,342,642 - 29,342,739 (+)NCBICelera
Cytogenetic Map3A3NCBI
cM Map312.58NCBI
MIR551B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383168,551,854 - 168,551,949 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3168,551,854 - 168,551,949 (+)EnsemblGRCh38hg38GRCh38
GRCh373168,269,642 - 168,269,737 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363169,752,335 - 169,752,430 (+)NCBINCBI36Build 36hg18NCBI36
Celera3166,668,180 - 166,668,275 (+)NCBICelera
Cytogenetic Map3q26.2NCBI
HuRef3165,640,396 - 165,640,491 (+)NCBIHuRef
CHM1_13168,232,538 - 168,232,633 (+)NCBICHM1_1
T2T-CHM13v2.03171,335,794 - 171,335,889 (+)NCBIT2T-CHM13v2.0
Mir551b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82115,917,693 - 115,917,790 (-)NCBIGRCr8
mRatBN7.22113,989,203 - 113,989,300 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2113,989,203 - 113,989,300 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2120,642,231 - 120,642,328 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02118,754,853 - 118,754,950 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02113,472,966 - 113,473,063 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02116,867,647 - 116,867,744 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2116,867,647 - 116,867,744 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02136,556,511 - 136,556,608 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2109,159,128 - 109,159,225 (-)NCBICelera
Cytogenetic Map2q24NCBI

Variants

.
Variants in Mir551b
3 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:17579
Count of gene targets:8237
Count of transcripts:13010
Interacting mature miRNAs:mmu-miR-551b-3p, mmu-miR-551b-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
1301114Ssial2_msusceptibility to sialadenitis 2 (mouse)Not determined32017486254180103Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
12904010Cfq8_mconditioned fear QTL 8 (mouse)32476823231332103Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
4142092Tgq13_mtriglyceride QTL 13 (mouse)Not determined1828816852288168Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
1300559Thypr3_mthymocyte proliferative response 3 (mouse)Not determined3452541938525519Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1301358Eae20_mexperimental allergic encephalomyelitis 20 (mouse)Not determined31163045345630591Mouse


Expression


Sequence


Ensembl Acc Id: ENSMUST00000102165
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl329,470,972 - 29,471,069 (+)Ensembl
GRCm38.p6 Ensembl329,416,823 - 29,416,920 (+)Ensembl
RefSeq Acc Id: NR_030422
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39329,470,972 - 29,471,069 (+)NCBI
GRCm38329,416,823 - 29,416,920 (+)ENTREZGENE
MGSCv37329,315,745 - 29,315,842 (+)RGD
Celera329,342,642 - 29,342,739 (+)RGD
cM Map3 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3691605 AgrOrtholog
Ensembl Genes ENSMUSG00000076120 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000102165 ENTREZGENE
MGD MGI:3691605 ENTREZGENE
miRBase MI0004131 ENTREZGENE
NCBI Gene 791072 ENTREZGENE
PhenoGen Mir551b PhenoGen
RNAcentral URS000008C563 RNACentral
  URS0000386AED RNACentral
  URS000075ACB2 RNACentral