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Gene: RT1-T24-3 (RT1 class I, locus T24, gene 3) Rattus norvegicus

Analyze

No known orthologs.

Symbol:

RT1-T24-3 (Ensembl: RT1-T24-1)

Name:

RT1 class I, locus T24, gene 3 (Ensembl:RT1 class I, locus T24, gene 1)

RGD ID:

1624211

Description:

Predicted to be located in membrane; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

RT1 class I, T24, gene 3

RGD Orthologs

Alliance Orthologs

More Info

homologs ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	2,723,043 - 2,752,691 (+)	NCBI		GRCr8
mRatBN7.2	20	2,718,210 - 2,730,604 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	2,718,279 - 2,776,154 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	2,770,185 - 2,809,487 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	2,775,145 - 2,814,446 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	2,801,652 - 2,840,970 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	3,226,010 - 3,257,254 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	3,226,313 - 3,233,694 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	5,324,458 - 5,336,132 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	2,864,012 - 2,871,315 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	145,036 - 152,339 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

acetamide (EXP)

alpha-Zearalanol (EXP)

cadmium dichloride (EXP)

gentamycin (EXP)

lidocaine (EXP)

paracetamol (EXP)

paraquat (EXP)

perfluorooctanoic acid (EXP)

silicon dioxide (EXP)

testosterone (EXP)

tetrachloromethane (EXP)

thioacetamide (EXP)

trichloroethene (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent (IBA)

antigen processing and presentation of endogenous peptide antigen via MHC class Ib (IBA)

immune response (IBA)

positive regulation of T cell mediated cytotoxicity (IBA)

Cellular Component

external side of plasma membrane (IBA)

extracellular space (IBA)

membrane (IEA)

Molecular Function

peptide antigen binding (IBA)

signaling receptor binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15060004

Genomics

Variants

Variants in RT1-T24-3
566 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	54
Count of miRNA genes:	49
Interacting mature miRNAs:	51
Transcripts:	ENSRNOT00000070903
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61472	Aia1	Adjuvant induced arthritis QTL 1	18	0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	2646395	4597031	Rat
2306850	Pia40	Pristane induced arthritis QTL 40		0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1527959	5304575	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
7387283	Uae44	Urinary albumin excretion QTL 44		0.1712	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	20	1	26123605	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600972	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24159021	Rat
1600382	Edcs3	Endometrial carcinoma susceptibility QTL3	3.5	0.003	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	20	1	25159026	Rat
61448	Ciaa1	CIA Autoantibody QTL 1	30	0.001	blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	20	2646395	4597031	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29191651	Rat
724519	Bp144	Blood pressure QTL 144		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	20	1	3624629	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29191651	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29191651	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29191651	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29191651	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578807	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600972	Rat

Markers in Region

BI284484

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	2,725,313 - 2,725,503 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	3,233,394 - 3,233,583	NCBI	Rnor6.0
Rnor_5.0	20	5,331,560 - 5,331,749	UniSTS	Rnor5.0
RGSC_v3.4	20	2,871,015 - 2,871,204	UniSTS	RGSC3.4
Celera	20	152,039 - 152,228	UniSTS
RH 3.4 Map	20	15.8	UniSTS
Cytogenetic Map	20	p12	UniSTS

RH131520

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	2,725,366 - 2,725,579 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	3,233,447 - 3,233,659	NCBI	Rnor6.0
Rnor_5.0	20	5,331,613 - 5,331,825	UniSTS	Rnor5.0
RGSC_v3.4	20	2,871,068 - 2,871,280	UniSTS	RGSC3.4
Celera	20	152,092 - 152,304	UniSTS
RH 3.4 Map	20	52.42	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001166403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001842427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BX883048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000041502 ⟹ ENSRNOP00000050015

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	2,718,279 - 2,741,359 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000061299 ⟹ ENSRNOP00000058011

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	2,734,375 - 2,741,958 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000070903 ⟹ ENSRNOP00000064880

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	2,718,279 - 2,725,613 (+)	Ensembl
Rnor_6.0 Ensembl	20	3,226,360 - 3,233,694 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078110 ⟹ ENSRNOP00000075284

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	2,761,482 - 2,774,583 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078454 ⟹ ENSRNOP00000074530

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	2,718,279 - 2,725,613 (+)	Ensembl
Rnor_6.0 Ensembl	20	3,230,052 - 3,232,793 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082449 ⟹ ENSRNOP00000072021

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	2,734,369 - 2,776,124 (+)	Ensembl
Rnor_6.0 Ensembl	20	3,226,352 - 3,232,428 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089044 ⟹ ENSRNOP00000075312

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	2,734,356 - 2,741,958 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092423 ⟹ ENSRNOP00000075787

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	3,226,313 - 3,233,367 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116904 ⟹ ENSRNOP00000079819

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	2,761,510 - 2,776,154 (+)	Ensembl

RefSeq Acc Id:

NM_001166403 ⟹ NP_001159875

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	2,723,125 - 2,730,428 (+)	NCBI
mRatBN7.2	20	2,718,310 - 2,725,614 (+)	NCBI
Rnor_6.0	20	3,226,391 - 3,233,694 (+)	NCBI
Rnor_5.0	20	5,324,458 - 5,336,132 (+)	NCBI
RGSC_v3.4	20	2,864,012 - 2,871,315 (+)	RGD
Celera	20	145,036 - 152,339 (+)	RGD

Sequence:

show sequence

ATGTGGGCTCTGATCTTCTGGTTCCTGACCCACCCCCAAGAAACTGGAGCCCGATCACACTCTC
TGCACTATTCTTACTCAGCCGTGACAGAGCCGGGCCCAGGAGTTCCTGCATTTTTTGCCAGTGG
TTTTGTAGATAACCAGCCCTTCATCCACTATGACAGTAGGAAGATGGAGGCAGAACCTTGTGCT
GACTGGCTGAGGGAAAATCCATATTACTTTGATGAGGAGACCCAGGTTTTCACCAATCGGATGA
AGATCTTCCAGTTGAGCCTGAGAAACATTCAGCAATACTACAACAGCTCTGGTGACCGGAGTCA
GAGAGCAGACGGCTTCCACCAGCAAGCAGGCCCTCACACCCTCCAGTTCACGTACGGCTGTGAG
ATGCAGGACAACAGGACCACAGGGCACTGGCAGTATGGCTACGATGGCAGGGATTACCTGACCT
TGGACTTGGACTCTATGCAATATACAGCAGCCACCTTCATTGCTGGCTACACCAAGCACAAGTG
GCAAAACAATGAGTACTGGCTGGAGAGAGAGAAGACCTACTTGGAGAAGGAGTGTGTCCTGTGG
CTAAAGAGATACTTAACTATGGGAGGAGAGAACTTTACCCGAACTGACCCTCCACAGACAACCG
TGACATGCCACCCCAGACCTGAAGGTGATGTGACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC
TGCTGACATCACCCTGACCTGGCAGTTGAATGGGGAGGACCTGACCCAGGACATGGAGCTTGTG
GAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCATCTGTGGTGGTACCTCTTGGGA
AGGAGCAGAAGTACACATGCCGTGTAGAGCATGAGGGACTGCCTGAGCCCGTCAGCCTGACATG
GGAGCCTCTTCAGCTCACCACGTCCAAGACAGAAGTATGTGCTAGGGGCAGATGGGGACTTCAA
GCAACCACCCTGTGTGTCCTCATGGTTTTCTGGGCCTGGTGCTAGTGTTTCTTGGACTTACCTG
CTACAGAATCCAGGCCAGAAGAAAGGACTGGCTCCGTCAGTTCCTGAAGAGGAGAGGCTCTCAG
GATGAGGACCCAGGGACAGGGGGCTCTGTGGGACCGGGAAAGGTAGCCTAGTCCCCGGGTGAGC
TAAGGCAAGAAGCCCAGAGACTCTGAAGGGATGGTAGGAGCTTTGCCTGTGCCTGGGCACTAGG
CCCATCAGTAGCCGTACCCTCATAGATTTGTGGCCATCAGTTATGTAATGGCAAAAGGCCCAAG
CCCCCCACATTAGATGAAGAAAAGAGCTGTGACTCCAAGTCACAGAGGCTCTTAGGCTTGTGGA
CAGCTTTTGGGAGTCAGTTCTCACCTTTGATCTCTGGGGATCAAAGAGTTTGGAAAGACGCCAT
TTACCCACTGAGCCTTCTCTCAAGCCTCAATAAACATCTTTAAATTCTTA

hide sequence

RefSeq Acc Id:

XM_039098963 ⟹ XP_038954891

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	2,723,043 - 2,734,553 (+)	NCBI
mRatBN7.2	20	2,718,210 - 2,730,604 (+)	NCBI

RefSeq Acc Id:

XM_063279400 ⟹ XP_063135470

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	2,723,043 - 2,730,428 (+)	NCBI

RefSeq Acc Id:

XM_063279401 ⟹ XP_063135471

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	2,723,043 - 2,752,691 (+)	NCBI

RefSeq Acc Id:

XM_063279402 ⟹ XP_063135472

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	2,723,043 - 2,730,428 (+)	NCBI

RefSeq Acc Id:

XM_063279403 ⟹ XP_063135473

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	2,723,043 - 2,729,560 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001159875	(Get FASTA)	NCBI Sequence Viewer
	XP_038954891	(Get FASTA)	NCBI Sequence Viewer
	XP_063135470	(Get FASTA)	NCBI Sequence Viewer
	XP_063135471	(Get FASTA)	NCBI Sequence Viewer
	XP_063135472	(Get FASTA)	NCBI Sequence Viewer
	XP_063135473	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAE84043	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000050015.2
	ENSRNOP00000064880.2
	ENSRNOP00000072021.2
	ENSRNOP00000074530.2
	ENSRNOP00000075284.2

RefSeq Acc Id:

NP_001159875 ⟸ NM_001166403

- UniProtKB:

A0A0G2K8A4 (UniProtKB/TrEMBL), F7EZJ6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MWALIFWFLTHPQETGARSHSLHYSYSAVTEPGPGVPAFFASGFVDNQPFIHYDSRKMEAEPCA
DWLRENPYYFDEETQVFTNRMKIFQLSLRNIQQYYNSSGDRSQRADGFHQQAGPHTLQFTYGCE
MQDNRTTGHWQYGYDGRDYLTLDLDSMQYTAATFIAGYTKHKWQNNEYWLEREKTYLEKECVLW
LKRYLTMGGENFTRTDPPQTTVTCHPRPEGDVTLRCWALGFYPADITLTWQLNGEDLTQDMELV
ETRPAGDGTFQKWASVVVPLGKEQKYTCRVEHEGLPEPVSLTWEPLQLTTSKTEVCARGRWGLQ
ATTLCVLMVFWAWC

hide sequence

Ensembl Acc Id:

ENSRNOP00000064880 ⟸ ENSRNOT00000070903

Ensembl Acc Id:

ENSRNOP00000075787 ⟸ ENSRNOT00000092423

Ensembl Acc Id:

ENSRNOP00000072021 ⟸ ENSRNOT00000082449

Ensembl Acc Id:

ENSRNOP00000074530 ⟸ ENSRNOT00000078454

RefSeq Acc Id:	XP_038954891 ⟸ XM_039098963
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K8A4 (UniProtKB/TrEMBL), F7EZJ6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000079819 ⟸ ENSRNOT00000116904

Ensembl Acc Id:

ENSRNOP00000050015 ⟸ ENSRNOT00000041502

Ensembl Acc Id:

ENSRNOP00000075284 ⟸ ENSRNOT00000078110

Ensembl Acc Id:

ENSRNOP00000075312 ⟸ ENSRNOT00000089044

Ensembl Acc Id:

ENSRNOP00000058011 ⟸ ENSRNOT00000061299

RefSeq Acc Id:	XP_063135471 ⟸ XM_063279401
- Peptide Label:	isoform X1
- UniProtKB:	F7EZJ6 (UniProtKB/TrEMBL), A0A0G2K8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135470 ⟸ XM_063279400
- Peptide Label:	isoform X1
- UniProtKB:	F7EZJ6 (UniProtKB/TrEMBL), A0A0G2K8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135472 ⟸ XM_063279402
- Peptide Label:	isoform X2
- UniProtKB:	M0R642 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135473 ⟸ XM_063279403
- Peptide Label:	isoform X3

Protein Domains

Ig-like MHC class I-like antigen recognition-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K8A4-F1-model_v2	AlphaFold	A0A0G2K8A4	1-316	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701288

Promoter ID:

EPDNEW_R11810

Type:

initiation region

Name:

RT1-T24-3_1

Description:

RT1 class I, locus T24, gene 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	3,226,360 - 3,226,420	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1624211	AgrOrtholog
BioCyc Gene	G2FUF-4804	BioCyc
Ensembl Genes	ENSRNOG00000032596	Ensembl, UniProtKB/TrEMBL
	ENSRNOG00000045924	Ensembl
Ensembl Transcript	ENSRNOT00000041502.3	UniProtKB/TrEMBL
	ENSRNOT00000070903.3	UniProtKB/TrEMBL
	ENSRNOT00000078110.2	UniProtKB/TrEMBL
	ENSRNOT00000078454.2	UniProtKB/TrEMBL
	ENSRNOT00000082449.2	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
	3.30.500.10	UniProtKB/TrEMBL
InterPro	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig/MHC_CS	UniProtKB/TrEMBL
	Ig_C1-set	UniProtKB/TrEMBL
	MHC_class-I_related	UniProtKB/TrEMBL
	MHC_I-like_Ag-recog	UniProtKB/TrEMBL
	MHC_I-like_Ag-recog_sf	UniProtKB/TrEMBL
	MHC_I/II-like_Ag-recog	UniProtKB/TrEMBL
	MHC_I_a_a1/a2	UniProtKB/TrEMBL
KEGG Report	rno:414788	UniProtKB/TrEMBL
NCBI Gene	414788	ENTREZGENE
PANTHER	HISTOCOMPATIBILITY 2, T REGION LOCUS 24	UniProtKB/TrEMBL
	MHC CLASS I-RELATED	UniProtKB/TrEMBL
Pfam	C1-set	UniProtKB/TrEMBL
	MHC_I	UniProtKB/TrEMBL
PhenoGen	RT1-T24-3	PhenoGen
PRINTS	MHCCLASSI	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
	IG_MHC	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000032596	RatGTEx
	ENSRNOG00000045924	RatGTEx
SMART	IGc1	UniProtKB/TrEMBL
Superfamily-SCOP	MHC_I/II-like_Ag-recog	UniProtKB/TrEMBL
	SSF48726	UniProtKB/TrEMBL
UniProt	A0A0G2K1X5_RAT	UniProtKB/TrEMBL
	A0A0G2K8A4	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2KA70_RAT	UniProtKB/TrEMBL
	F7EZJ6	ENTREZGENE, UniProtKB/TrEMBL
	M0R642	ENTREZGENE, UniProtKB/TrEMBL
	Q6MG04_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-09-15	RT1-T24-3	RT1 class I, locus T24, gene 3	RT1-T24-3	RT1 class I, T24, gene 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2007-05-03	RT1-T24-3	RT1 class I, T24, gene 3			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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