Afap1 (actin filament associated protein 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Afap1 (actin filament associated protein 1) Mus musculus
Analyze
Symbol: Afap1
Name: actin filament associated protein 1
RGD ID: 1623955
MGI Page MGI
Description: Predicted to enable SH2 domain binding activity and SH3 domain binding activity. Predicted to be involved in regulation of signal transduction. Predicted to be located in actin cytoskeleton and focal adhesion. Predicted to be active in actin filament and cytosol. Is expressed in cerebral cortex subventricular zone; cerebral cortex ventricular layer; and dentate gyrus subgranular zone. Human ortholog(s) of this gene implicated in open-angle glaucoma. Orthologous to human AFAP1 (actin filament associated protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 110 kDa actin filament-associated protein; 2600003E23Rik; 9630044L16Rik; actin filament-associated protein 1; Afap; AFAP-110; AI848729; mKIAA3018
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39536,050,713 - 36,161,267 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl536,050,663 - 36,161,267 (+)EnsemblGRCm39 Ensembl
GRCm38535,893,319 - 36,003,923 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl535,893,319 - 36,003,923 (+)EnsemblGRCm38mm10GRCm38
MGSCv37536,235,968 - 36,346,571 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36536,210,180 - 36,320,783 (+)NCBIMGSCv36mm8
Celera533,366,584 - 33,481,553 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map519.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloropropane-1,2-diol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
butan-1-ol  (ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dioxygen  (EXP)
disulfiram  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
ethanol  (EXP)
ethylparaben  (ISO)
folic acid  (ISO)
fonofos  (ISO)
FR900359  (ISO)
hydrogen peroxide  (EXP)
hydroquinone  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
ivermectin  (ISO)
lamivudine  (ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
paracetamol  (ISO)
parathion  (ISO)
PCB138  (EXP)
perfluorononanoic acid  (ISO)
phenol red  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP)
terbufos  (ISO)
thapsigargin  (EXP)
titanium dioxide  (EXP)
toluene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (EXP)
valproic acid  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
actin cytoskeleton  (ISO)
actin filament  (IBA,ISO)
cytoplasm  (IEA)
cytoskeleton  (IEA)
cytosol  (IBA,IEA,ISO)
focal adhesion  (IEA,ISO)
stress fiber  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Common variants near ABCA1, AFAP1 and GMDS confer risk of primary open-angle glaucoma. Gharahkhani P, etal., Nat Genet. 2014 Oct;46(10):1120-1125. doi: 10.1038/ng.3079. Epub 2014 Aug 31.
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12532398   PMID:14610273   PMID:14621295   PMID:15314167   PMID:16107646  
PMID:16141072   PMID:16141073   PMID:17360811   PMID:18723076   PMID:18725516   PMID:18799693   PMID:19281763   PMID:21677750   PMID:21873635   PMID:23431145   PMID:24154525   PMID:25043309  
PMID:29254152   PMID:33378226   PMID:34321999   PMID:37142655  


Genomics

Comparative Map Data
Afap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39536,050,713 - 36,161,267 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl536,050,663 - 36,161,267 (+)EnsemblGRCm39 Ensembl
GRCm38535,893,319 - 36,003,923 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl535,893,319 - 36,003,923 (+)EnsemblGRCm38mm10GRCm38
MGSCv37536,235,968 - 36,346,571 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36536,210,180 - 36,320,783 (+)NCBIMGSCv36mm8
Celera533,366,584 - 33,481,553 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map519.02NCBI
AFAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3847,758,713 - 7,939,861 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl47,758,714 - 7,939,926 (-)EnsemblGRCh38hg38GRCh38
GRCh3747,760,440 - 7,941,588 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3647,811,340 - 7,992,553 (-)NCBINCBI36Build 36hg18NCBI36
Celera47,662,306 - 7,842,025 (-)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef47,682,587 - 7,779,433 (-)NCBIHuRef
HuRef47,791,849 - 7,862,997 (-)NCBIHuRef
CHM1_147,758,814 - 7,939,654 (-)NCBICHM1_1
T2T-CHM13v2.047,730,695 - 7,918,406 (-)NCBIT2T-CHM13v2.0
Afap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81478,967,961 - 79,081,032 (-)NCBIGRCr8
mRatBN7.21474,743,322 - 74,856,300 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1474,743,320 - 74,856,263 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1479,184,574 - 79,297,848 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01480,425,450 - 80,538,722 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01476,870,445 - 76,983,714 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01479,923,132 - 80,035,096 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1479,919,717 - 79,988,110 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01479,558,456 - 79,622,351 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41480,355,358 - 80,448,224 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11480,357,748 - 80,450,615 (-)NCBI
Celera1473,679,280 - 73,741,995 (-)NCBICelera
Cytogenetic Map14q21NCBI
Afap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555142,987,408 - 3,050,558 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555142,934,115 - 3,050,347 (+)NCBIChiLan1.0ChiLan1.0
AFAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v238,035,095 - 8,218,160 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan147,965,803 - 8,146,437 (-)NCBINHGRI_mPanPan1
PanPan1.147,821,426 - 7,933,202 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl47,826,585 - 7,939,478 (-)Ensemblpanpan1.1panPan2
AFAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1359,686,887 - 59,828,924 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl359,689,014 - 59,829,041 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha362,335,857 - 62,477,761 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0360,158,767 - 60,301,082 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl360,158,770 - 60,301,107 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1359,655,394 - 59,756,032 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0359,857,852 - 59,999,931 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0360,215,949 - 60,358,554 (-)NCBIUU_Cfam_GSD_1.0
Afap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528565,586,383 - 65,716,842 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647719,287,856 - 19,418,568 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647719,288,075 - 19,418,543 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AFAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl83,069,959 - 3,202,533 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.183,070,031 - 3,198,319 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.284,036,949 - 4,078,742 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AFAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12743,715,242 - 43,892,127 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2743,715,243 - 43,892,220 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605119,859 - 207,620 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Afap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475523,659,490 - 23,769,325 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475523,659,997 - 23,771,148 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Afap1
3960 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2033
Count of miRNA genes:760
Interacting mature miRNAs:1004
Transcripts:ENSMUST00000064571, ENSMUST00000141824, ENSMUST00000146300
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53102427565024480Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53102427565024480Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53585456869854714Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53585456869854714Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse

Markers in Region
AI848729  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38536,003,732 - 36,003,874UniSTSGRCm38
MGSCv37536,346,381 - 36,346,523UniSTSGRCm37
Celera533,481,363 - 33,481,505UniSTS
Cytogenetic Map5B1UniSTS
Whitehead/MRC_RH5475.6UniSTS
D5Mit149  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38535,919,002 - 35,919,151UniSTSGRCm38
MGSCv37536,261,651 - 36,261,800UniSTSGRCm37
Celera533,395,474 - 33,395,623UniSTS
Cytogenetic Map5B1UniSTS
cM Map519.0UniSTS
Whitehead Genetic515.3UniSTS
Whitehead/MRC_RH5472.87UniSTS
RH127087  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38545,434,060 - 45,434,268UniSTSGRCm38
MGSCv37545,825,299 - 45,825,507UniSTSGRCm37
Celera542,859,940 - 42,860,148UniSTS
Celera533,416,978 - 33,417,186UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map5B1UniSTS
cM Map525.0UniSTS
Whitehead/MRC_RH5611.74UniSTS
RH140863  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38545,434,119 - 45,434,321UniSTSGRCm38
MGSCv37545,825,358 - 45,825,560UniSTSGRCm37
Celera542,859,999 - 42,860,201UniSTS
Celera533,417,037 - 33,417,236UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map5B3UniSTS
cM Map530.0UniSTS


Sequence


Ensembl Acc Id: ENSMUST00000064571   ⟹   ENSMUSP00000067779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl536,050,663 - 36,161,267 (+)Ensembl
GRCm38.p6 Ensembl535,893,319 - 36,003,923 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141824   ⟹   ENSMUSP00000119364
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl536,070,426 - 36,153,368 (+)Ensembl
GRCm38.p6 Ensembl535,913,082 - 35,996,024 (+)Ensembl
Ensembl Acc Id: ENSMUST00000146300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl536,050,809 - 36,063,037 (+)Ensembl
GRCm38.p6 Ensembl535,893,465 - 35,905,693 (+)Ensembl
Ensembl Acc Id: ENSMUST00000201482
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl536,144,349 - 36,148,570 (+)Ensembl
GRCm38.p6 Ensembl535,987,005 - 35,991,226 (+)Ensembl
Ensembl Acc Id: ENSMUST00000212374   ⟹   ENSMUSP00000148414
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl536,141,532 - 36,147,012 (+)Ensembl
GRCm38.p6 Ensembl535,984,188 - 35,989,668 (+)Ensembl
RefSeq Acc Id: NM_001403419   ⟹   NP_001390348
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39536,050,713 - 36,161,267 (+)NCBI
RefSeq Acc Id: NM_001403420   ⟹   NP_001390349
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39536,050,713 - 36,161,267 (+)NCBI
RefSeq Acc Id: NM_001403421   ⟹   NP_001390350
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39536,050,713 - 36,161,267 (+)NCBI
RefSeq Acc Id: NM_027373   ⟹   NP_081649
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39536,050,713 - 36,161,267 (+)NCBI
GRCm38535,893,319 - 36,003,922 (+)NCBI
MGSCv37536,235,968 - 36,346,571 (+)RGD
Celera533,366,584 - 33,481,553 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_081649   ⟸   NM_027373
- Peptide Label: isoform 2
- UniProtKB: Q3UGX1 (UniProtKB/Swiss-Prot),   Q6ZPE4 (UniProtKB/Swiss-Prot),   Q80YS6 (UniProtKB/Swiss-Prot),   E9Q8X9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000148414   ⟸   ENSMUST00000212374
Ensembl Acc Id: ENSMUSP00000067779   ⟸   ENSMUST00000064571
Ensembl Acc Id: ENSMUSP00000119364   ⟸   ENSMUST00000141824
RefSeq Acc Id: NP_001390348   ⟸   NM_001403419
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001390349   ⟸   NM_001403420
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001390350   ⟸   NM_001403421
- Peptide Label: isoform 4
- UniProtKB: E9Q8X9 (UniProtKB/TrEMBL)
Protein Domains
PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80YS6-F1-model_v2 AlphaFold Q80YS6 1-731 view protein structure

Promoters
RGD ID:6886522
Promoter ID:EPDNEW_M6712
Type:initiation region
Name:Afap1_1
Description:Mus musculus actin filament associated protein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6713  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38535,893,369 - 35,893,429EPDNEW
RGD ID:6886524
Promoter ID:EPDNEW_M6713
Type:single initiation site
Name:Afap1_2
Description:Mus musculus actin filament associated protein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6712  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38535,918,113 - 35,918,173EPDNEW
RGD ID:6837001
Promoter ID:MM_KWN:42033
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000061234,   OTTMUST00000061263
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36536,235,791 - 36,236,291 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917542 AgrOrtholog
Ensembl Genes ENSMUSG00000029094 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000064571 ENTREZGENE
  ENSMUST00000064571.11 UniProtKB/Swiss-Prot
  ENSMUST00000141824.2 UniProtKB/TrEMBL
  ENSMUST00000212374.2 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AFAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:70292 UniProtKB/Swiss-Prot
MGD MGI:1917542 ENTREZGENE
NCBI Gene 70292 ENTREZGENE
PANTHER PTHR14338 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14338:SF8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Afap1 PhenoGen
PROSITE PH_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1D5RLL0_MOUSE UniProtKB/TrEMBL
  AFAP1_MOUSE UniProtKB/Swiss-Prot
  E9Q8X9 ENTREZGENE, UniProtKB/TrEMBL
  Q3UGX1 ENTREZGENE
  Q6ZPE4 ENTREZGENE
  Q80YS6 ENTREZGENE
  Q8BV31_MOUSE UniProtKB/TrEMBL
  Q9CT56_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3UGX1 UniProtKB/Swiss-Prot
  Q6ZPE4 UniProtKB/Swiss-Prot