Chtop (chromatin target of PRMT1) - Rat Genome Database

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Gene: Chtop (chromatin target of PRMT1) Mus musculus
Analyze
Symbol: Chtop
Name: chromatin target of PRMT1
RGD ID: 1622332
MGI Page MGI
Description: Predicted to enable mRNA binding activity and methyl-CpG binding activity. Acts upstream of or within in utero embryonic development. Predicted to be part of transcription export complex. Predicted to be active in nuclear speck. Is expressed in several structures, including alimentary system; dorsal root ganglion; integumental system; olfactory epithelium; and thymus. Orthologous to human CHTOP (chromatin target of PRMT1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2500003M10Rik; C81330; chromatin target of PRMT1 protein; F; Fop; friend of Prmt1; small arginine- and glycine-rich protein; small protein rich in arginine and glycine; Srag
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm6365  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,405,846 - 90,417,400 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,406,263 - 90,416,805 (-)EnsemblGRCm39 Ensembl
GRCm38390,498,539 - 90,509,527 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,498,956 - 90,509,498 (-)EnsemblGRCm38mm10GRCm38
MGSCv37390,302,880 - 90,313,365 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,584,885 - 90,595,370 (-)NCBIMGSCv36mm8
Celera390,536,803 - 90,547,288 (-)NCBICelera
Cytogenetic Map3F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal abdominal muscle morphology  (IEA)
abnormal adenohypophysis morphology  (IEA)
abnormal atrioventricular valve morphology  (IEA)
abnormal azygos vein topology  (IEA)
abnormal brachial plexus formation  (IEA)
abnormal carotid artery origin  (IEA)
abnormal cervical atlas morphology  (IEA)
abnormal choroid plexus morphology  (IEA)
abnormal dorsal pancreas topology  (IEA)
abnormal ductus venosus morphology  (IEA)
abnormal ductus venosus valve topology  (IEA)
abnormal eye morphology  (IEA)
abnormal eye muscle morphology  (IEA)
abnormal fetal atrioventricular canal morphology  (IEA)
abnormal forebrain morphology  (IEA)
abnormal hepatic portal vein formation  (IEA)
abnormal hepatic portal vein morphology  (IEA)
abnormal hyoid bone body morphology  (IEA)
abnormal interventricular foramen morphology  (IEA)
abnormal joint morphology  (IEA)
abnormal maxilla morphology  (IEA)
abnormal neurohypophysis morphology  (IEA)
abnormal olfactory bulb position  (IEA)
abnormal optic cup morphology  (IEA)
abnormal optic stalk morphology  (IEA)
abnormal pancreas topology  (IEA)
abnormal pineal gland morphology  (IEA)
abnormal placenta morphology  (IAGP)
abnormal placental labyrinth vasculature morphology  (IAGP)
abnormal rectum morphology  (IEA)
abnormal salivary gland morphology  (IEA)
abnormal small intestine placement  (IEA)
abnormal spongiotrophoblast layer morphology  (IAGP)
abnormal subclavian artery origin  (IEA)
abnormal thyroid gland morphology  (IEA)
abnormal ureter topology  (IEA)
abnormal vertebral artery topology  (IEA)
abnormal vertebral body morphology  (IEA)
abnormal viscerocranium morphology  (IEA)
abnormal vitelline vein connection  (IEA)
abnormal vitelline vein topology  (IEA)
abnormal Wolffian duct morphology  (IEA)
absent celiac artery  (IEA)
absent costovertebral joint  (IEA)
absent dorsal root ganglion  (IEA)
absent ductus venosus valve  (IEA)
absent extracranial vertebral artery segment  (IEA)
absent hypoglossal canal  (IEA)
absent hypoglossal nerve  (IEA)
absent intrahepatic inferior vena cava segment  (IEA)
absent olfactory bulb  (IEA)
absent parasellar internal carotid artery  (IEA)
absent spleen  (IEA)
absent vertebrae  (IEA)
absent vertebral arch  (IEA)
anal atresia  (IEA)
anastomosis between common carotid and vertebral artery  (IEA)
anomalous pulmonary venous connection  (IEA)
arteriovenous malformation  (IEA)
bicuspid aortic valve  (IAGP)
blind ureter  (IEA)
common atrium  (IEA)
decreased cervical vertebrae number  (IEA)
decreased rib number  (IEA)
decreased thoracic vertebrae number  (IEA)
diaphragmatic hernia  (IEA)
double outlet right ventricle  (IAGP)
ductus venosus stenosis  (IEA)
embryo cyst  (IEA)
fetal growth retardation  (IEA)
fused dorsal root ganglion  (IEA)
fused right lung lobes  (IEA)
fusion of atlas and occipital bones  (IEA)
fusion of vertebral arches  (IEA)
heterochrony  (IEA)
holoprosencephaly  (IEA)
internal hemorrhage  (IEA)
intestinal stenosis  (IEA)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
muscular ventricular septal defect  (IEA)
myelocele  (IEA)
ostium primum atrial septal defect  (IEA)
pelvic kidney  (IEA)
perimembraneous ventricular septal defect  (IEA)
persistent truncus arteriosis  (IEA)
preweaning lethality, complete penetrance  (IEA)
reduced sympathetic cervical ganglion size  (IEA)
retro-esophageal left subclavian artery  (IEA)
retroesophageal right subclavian artery  (IEA)
rib bifurcation  (IEA)
rib fusion  (IEA)
right aortic arch  (IEA)
scoliosis  (IEA)
small nodose ganglion  (IEA)
small superior cervical ganglion  (IEA)
spleen hypoplasia  (IEA)
subcutaneous edema  (IEA)
thin hypoglossal nerve  (IEA)
thyroid gland hypoplasia  (IEA)
urinary bladder hypoplasia  (IEA)
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8858346   PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12904583   PMID:14610273  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:19254951   PMID:19858291   PMID:20688955   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23665500  
PMID:27626380   PMID:27996060   PMID:28185240   PMID:29539633   PMID:30196744   PMID:30595499   PMID:36417873  


Genomics

Comparative Map Data
Chtop
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,405,846 - 90,417,400 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,406,263 - 90,416,805 (-)EnsemblGRCm39 Ensembl
GRCm38390,498,539 - 90,509,527 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,498,956 - 90,509,498 (-)EnsemblGRCm38mm10GRCm38
MGSCv37390,302,880 - 90,313,365 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,584,885 - 90,595,370 (-)NCBIMGSCv36mm8
Celera390,536,803 - 90,547,288 (-)NCBICelera
Cytogenetic Map3F1NCBI
CHTOP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,634,066 - 153,646,306 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1153,633,982 - 153,646,306 (+)EnsemblGRCh38hg38GRCh38
GRCh371153,606,542 - 153,618,782 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,873,149 - 151,884,603 (+)NCBINCBI36Build 36hg18NCBI36
Celera1126,677,559 - 126,689,013 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,969,964 - 124,982,321 (+)NCBIHuRef
CHM1_11155,002,435 - 155,014,759 (+)NCBICHM1_1
T2T-CHM13v2.01152,771,330 - 152,783,570 (+)NCBIT2T-CHM13v2.0
Chtop
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22175,981,266 - 175,992,854 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,981,271 - 175,992,748 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2183,121,379 - 183,132,881 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02181,143,642 - 181,155,144 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02175,743,986 - 175,755,485 (-)NCBIRnor_WKY
Rnor_6.02189,887,850 - 189,900,079 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,887,857 - 189,899,325 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,318,314 - 209,330,501 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,772,001 - 182,783,476 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,722,109 - 182,733,582 (-)NCBI
Celera2169,916,772 - 169,928,245 (-)NCBICelera
Cytogenetic Map2q34NCBI
Chtop
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545282,342 - 292,785 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955545282,342 - 292,428 (+)NCBIChiLan1.0ChiLan1.0
CHTOP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1195,922,882 - 95,934,368 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,989,920 - 129,002,242 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,617,934 - 132,630,654 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,617,934 - 132,630,654 (+)Ensemblpanpan1.1panPan2
CHTOP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,418,902 - 43,428,012 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,419,707 - 43,427,856 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,911,925 - 42,921,035 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,368,614 - 43,377,725 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,368,614 - 43,377,583 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1743,070,678 - 43,079,784 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0743,124,385 - 43,133,500 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,408,041 - 43,417,155 (-)NCBIUU_Cfam_GSD_1.0
Chtop
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,404,354 - 24,414,140 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,434,773 - 3,445,080 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365803,436,260 - 3,444,522 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHTOP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,994,263 - 96,005,585 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,996,030 - 96,006,511 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,889,209 - 104,898,793 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHTOP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,159,463 - 10,170,949 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2010,154,734 - 10,170,883 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,536,012 - 9,548,571 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chtop
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,501,470 - 3,511,451 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,501,468 - 3,511,481 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chtop
273 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1652
Count of miRNA genes:421
Interacting mature miRNAs:467
Transcripts:ENSMUST00000001043, ENSMUST00000049937, ENSMUST00000076639, ENSMUST00000107342, ENSMUST00000107343, ENSMUST00000107344, ENSMUST00000107346, ENSMUST00000131868, ENSMUST00000146740
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse

Markers in Region
RH127057  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38390,499,024 - 90,499,271UniSTSGRCm38
MGSCv37390,302,946 - 90,303,193UniSTSGRCm37
Celera390,536,869 - 90,537,116UniSTS
Cytogenetic Map3F2UniSTS
AI266795  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38390,511,248 - 90,511,360UniSTSGRCm38
MGSCv37390,315,170 - 90,315,282UniSTSGRCm37
Celera390,549,087 - 90,549,199UniSTS
Cytogenetic Map3F1-F2UniSTS
Cytogenetic Map3F2UniSTS
Whitehead/MRC_RH31001.49UniSTS
RH125224  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38390,499,039 - 90,499,142UniSTSGRCm38
GRCm381911,876,723 - 11,876,855UniSTSGRCm38
MGSCv371911,951,213 - 11,951,345UniSTSGRCm37
MGSCv37390,302,961 - 90,303,064UniSTSGRCm37
Celera1912,566,612 - 12,566,744UniSTS
Celera390,536,884 - 90,536,987UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map19AUniSTS
UniSTS:234742  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38390,511,074 - 90,511,316UniSTSGRCm38
MGSCv37390,314,996 - 90,315,238UniSTSGRCm37
Celera390,548,913 - 90,549,155UniSTS
Cytogenetic Map3F1-F2UniSTS
Cytogenetic Map3F2UniSTS
D19Bwg0552e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38390,499,004 - 90,499,173UniSTSGRCm38
GRCm381911,876,688 - 11,876,886UniSTSGRCm38
MGSCv371911,951,178 - 11,951,376UniSTSGRCm37
MGSCv37390,302,926 - 90,303,095UniSTSGRCm37
Celera1912,566,577 - 12,566,775UniSTS
Celera390,536,849 - 90,537,018UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map19AUniSTS
cM Map195.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001293776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_867226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB041654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC160552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC120651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE852996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ746440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX234428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000001043   ⟹   ENSMUSP00000001043
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,406,263 - 90,416,758 (-)Ensembl
GRCm38.p6 Ensembl390,498,956 - 90,509,451 (-)Ensembl
RefSeq Acc Id: ENSMUST00000049937   ⟹   ENSMUSP00000061800
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,406,272 - 90,416,805 (-)Ensembl
GRCm38.p6 Ensembl390,498,965 - 90,509,498 (-)Ensembl
RefSeq Acc Id: ENSMUST00000076639   ⟹   ENSMUSP00000075936
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,406,265 - 90,416,769 (-)Ensembl
GRCm38.p6 Ensembl390,498,958 - 90,509,462 (-)Ensembl
RefSeq Acc Id: ENSMUST00000107342   ⟹   ENSMUSP00000102965
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,407,002 - 90,416,792 (-)Ensembl
GRCm38.p6 Ensembl390,499,695 - 90,509,485 (-)Ensembl
RefSeq Acc Id: ENSMUST00000107343   ⟹   ENSMUSP00000102966
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,406,263 - 90,416,757 (-)Ensembl
GRCm38.p6 Ensembl390,498,956 - 90,509,450 (-)Ensembl
RefSeq Acc Id: ENSMUST00000107344   ⟹   ENSMUSP00000102967
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,406,263 - 90,416,759 (-)Ensembl
GRCm38.p6 Ensembl390,498,956 - 90,509,452 (-)Ensembl
RefSeq Acc Id: ENSMUST00000107346   ⟹   ENSMUSP00000102969
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,406,801 - 90,416,781 (-)Ensembl
GRCm38.p6 Ensembl390,499,494 - 90,509,474 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131868   ⟹   ENSMUSP00000123448
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,410,438 - 90,416,329 (-)Ensembl
GRCm38.p6 Ensembl390,503,131 - 90,509,022 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146740   ⟹   ENSMUSP00000116945
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,409,465 - 90,416,783 (-)Ensembl
GRCm38.p6 Ensembl390,502,158 - 90,509,476 (-)Ensembl
RefSeq Acc Id: NM_001293776   ⟹   NP_001280705
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,405,846 - 90,416,805 (-)NCBI
GRCm38390,498,539 - 90,509,498 (-)NCBI
Celera390,536,384 - 90,547,343 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001293777   ⟹   NP_001280706
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,405,846 - 90,416,805 (-)NCBI
GRCm38390,498,539 - 90,509,498 (-)NCBI
Celera390,536,384 - 90,547,343 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001293778   ⟹   NP_001280707
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,405,846 - 90,416,805 (-)NCBI
GRCm38390,498,539 - 90,509,498 (-)NCBI
Celera390,536,384 - 90,547,343 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001293779   ⟹   NP_001280708
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,405,846 - 90,416,805 (-)NCBI
GRCm38390,498,539 - 90,509,498 (-)NCBI
Celera390,536,384 - 90,547,343 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001293780   ⟹   NP_001280709
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,405,846 - 90,416,805 (-)NCBI
GRCm38390,498,539 - 90,509,498 (-)NCBI
Celera390,536,384 - 90,547,343 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001293781   ⟹   NP_001280710
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,405,846 - 90,416,805 (-)NCBI
GRCm38390,498,539 - 90,509,498 (-)NCBI
Celera390,536,384 - 90,547,343 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001293782   ⟹   NP_001280711
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,405,846 - 90,416,805 (-)NCBI
GRCm38390,498,539 - 90,509,498 (-)NCBI
Celera390,536,384 - 90,547,343 (-)NCBI
Sequence:
RefSeq Acc Id: NM_023215   ⟹   NP_075704
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,405,846 - 90,416,805 (-)NCBI
GRCm38390,498,539 - 90,509,498 (-)NCBI
MGSCv37390,302,880 - 90,313,365 (-)RGD
Celera390,536,384 - 90,547,343 (-)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_004941377
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,406,263 - 90,417,400 (-)NCBI
Sequence:
RefSeq Acc Id: XR_867226
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,406,263 - 90,417,400 (-)NCBI
GRCm38390,498,956 - 90,509,527 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001280705 (Get FASTA)   NCBI Sequence Viewer  
  NP_001280706 (Get FASTA)   NCBI Sequence Viewer  
  NP_001280707 (Get FASTA)   NCBI Sequence Viewer  
  NP_001280708 (Get FASTA)   NCBI Sequence Viewer  
  NP_001280709 (Get FASTA)   NCBI Sequence Viewer  
  NP_001280710 (Get FASTA)   NCBI Sequence Viewer  
  NP_001280711 (Get FASTA)   NCBI Sequence Viewer  
  NP_075704 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH04582 (Get FASTA)   NCBI Sequence Viewer  
  AAH83333 (Get FASTA)   NCBI Sequence Viewer  
  AAI08397 (Get FASTA)   NCBI Sequence Viewer  
  AAI20652 (Get FASTA)   NCBI Sequence Viewer  
  AAI44776 (Get FASTA)   NCBI Sequence Viewer  
  BAA95102 (Get FASTA)   NCBI Sequence Viewer  
  BAB23371 (Get FASTA)   NCBI Sequence Viewer  
  BAB23984 (Get FASTA)   NCBI Sequence Viewer  
  BAB25951 (Get FASTA)   NCBI Sequence Viewer  
  BAB27232 (Get FASTA)   NCBI Sequence Viewer  
  BAC33189 (Get FASTA)   NCBI Sequence Viewer  
  BAC37084 (Get FASTA)   NCBI Sequence Viewer  
  BAE21348 (Get FASTA)   NCBI Sequence Viewer  
  BAE28718 (Get FASTA)   NCBI Sequence Viewer  
  BAE31263 (Get FASTA)   NCBI Sequence Viewer  
  EDL15128 (Get FASTA)   NCBI Sequence Viewer  
  EDL15129 (Get FASTA)   NCBI Sequence Viewer  
  EDL15130 (Get FASTA)   NCBI Sequence Viewer  
  EDL15131 (Get FASTA)   NCBI Sequence Viewer  
  EDL15132 (Get FASTA)   NCBI Sequence Viewer  
  EDL15133 (Get FASTA)   NCBI Sequence Viewer  
  EDL15134 (Get FASTA)   NCBI Sequence Viewer  
  EDL15135 (Get FASTA)   NCBI Sequence Viewer  
  Q9CY57 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_075704   ⟸   NM_023215
- Peptide Label: isoform 3
- UniProtKB: Q9CY57 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001280708   ⟸   NM_001293779
- Peptide Label: isoform 5
- UniProtKB: Q9CY57 (UniProtKB/Swiss-Prot),   A0A6P5PE50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001280706   ⟸   NM_001293777
- Peptide Label: isoform 2
- UniProtKB: Q9CY57 (UniProtKB/Swiss-Prot),   A0A6P5PCE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001280707   ⟸   NM_001293778
- Peptide Label: isoform 4
- UniProtKB: Q9CY57 (UniProtKB/Swiss-Prot),   E9PW20 (UniProtKB/TrEMBL),   A0A6P5PER1 (UniProtKB/TrEMBL),   A0A8C6G6E6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001280705   ⟸   NM_001293776
- Peptide Label: isoform 1
- UniProtKB: Q9JJ95 (UniProtKB/Swiss-Prot),   Q9CY57 (UniProtKB/Swiss-Prot),   A0A6P5PI62 (UniProtKB/TrEMBL),   A0A8C6G6B7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001280711   ⟸   NM_001293782
- Peptide Label: isoform 3
- UniProtKB: Q9CY57 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001280710   ⟸   NM_001293781
- Peptide Label: isoform 7
- UniProtKB: Q9CY57 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001280709   ⟸   NM_001293780
- Peptide Label: isoform 6
- UniProtKB: B7ZMS6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000001043   ⟸   ENSMUST00000001043
RefSeq Acc Id: ENSMUSP00000102966   ⟸   ENSMUST00000107343
RefSeq Acc Id: ENSMUSP00000102965   ⟸   ENSMUST00000107342
RefSeq Acc Id: ENSMUSP00000102967   ⟸   ENSMUST00000107344
RefSeq Acc Id: ENSMUSP00000102969   ⟸   ENSMUST00000107346
RefSeq Acc Id: ENSMUSP00000116945   ⟸   ENSMUST00000146740
RefSeq Acc Id: ENSMUSP00000123448   ⟸   ENSMUST00000131868
RefSeq Acc Id: ENSMUSP00000075936   ⟸   ENSMUST00000076639
RefSeq Acc Id: ENSMUSP00000061800   ⟸   ENSMUST00000049937
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CY57-F1-model_v2 AlphaFold Q9CY57 1-249 view protein structure

Promoters
RGD ID:6833171
Promoter ID:MM_KWN:35038
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   MEF_B6
Transcripts:UC008QCN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36390,311,111 - 90,312,312 (-)MPROMDB
RGD ID:6833178
Promoter ID:MM_KWN:35039
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000001043,   ENSMUST00000107342,   ENSMUST00000107343,   ENSMUST00000107344,   ENSMUST00000107346,   OTTMUST00000051919,   OTTMUST00000052089,   OTTMUST00000052090,   UC008QCP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36390,312,816 - 90,313,657 (-)MPROMDB
RGD ID:6881388
Promoter ID:EPDNEW_M4124
Type:single initiation site
Name:Chtop_2
Description:Mus musculus chromatin target of PRMT1 , transcript variant 7,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4125  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38390,508,729 - 90,508,789EPDNEW
RGD ID:6881348
Promoter ID:EPDNEW_M4125
Type:initiation region
Name:Chtop_1
Description:Mus musculus chromatin target of PRMT1 , transcript variant 7,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4124  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38390,509,474 - 90,509,534EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913761 AgrOrtholog
Ensembl Genes ENSMUSG00000001017 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000001043 ENTREZGENE
  ENSMUSP00000001043.8 UniProtKB/Swiss-Prot
  ENSMUSP00000061800 ENTREZGENE
  ENSMUSP00000061800.7 UniProtKB/Swiss-Prot
  ENSMUSP00000075936 ENTREZGENE
  ENSMUSP00000075936.5 UniProtKB/Swiss-Prot
  ENSMUSP00000102965 ENTREZGENE
  ENSMUSP00000102965.2 UniProtKB/Swiss-Prot
  ENSMUSP00000102966 ENTREZGENE
  ENSMUSP00000102966.2 UniProtKB/Swiss-Prot
  ENSMUSP00000102967 ENTREZGENE
  ENSMUSP00000102967.2 UniProtKB/Swiss-Prot
  ENSMUSP00000102969 ENTREZGENE
  ENSMUSP00000102969.2 UniProtKB/TrEMBL
  ENSMUSP00000116945.2 UniProtKB/TrEMBL
  ENSMUSP00000123448.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000001043 ENTREZGENE
  ENSMUST00000001043.14 UniProtKB/Swiss-Prot
  ENSMUST00000049937 ENTREZGENE
  ENSMUST00000049937.13 UniProtKB/Swiss-Prot
  ENSMUST00000076639 ENTREZGENE
  ENSMUST00000076639.11 UniProtKB/Swiss-Prot
  ENSMUST00000107342 ENTREZGENE
  ENSMUST00000107342.2 UniProtKB/Swiss-Prot
  ENSMUST00000107343 ENTREZGENE
  ENSMUST00000107343.8 UniProtKB/Swiss-Prot
  ENSMUST00000107344 ENTREZGENE
  ENSMUST00000107344.8 UniProtKB/Swiss-Prot
  ENSMUST00000107346 ENTREZGENE
  ENSMUST00000107346.8 UniProtKB/TrEMBL
  ENSMUST00000131868.2 UniProtKB/TrEMBL
  ENSMUST00000146740.8 UniProtKB/TrEMBL
InterPro FoP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:66511 UniProtKB/Swiss-Prot
MGD MGI:1913761 ENTREZGENE
NCBI Gene 66511 ENTREZGENE
Pfam FoP_duplication UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Chtop PhenoGen
SMART FoP_duplication UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A6P5PCE0 ENTREZGENE
  A0A6P5PE50 ENTREZGENE
  A0A6P5PER1 ENTREZGENE
  A0A6P5PI62 ENTREZGENE
  A0A8C6G6B7 ENTREZGENE
  A0A8C6G6E6 ENTREZGENE
  B7ZMS6 ENTREZGENE, UniProtKB/TrEMBL
  CHTOP_MOUSE UniProtKB/Swiss-Prot
  D3YZA1_MOUSE UniProtKB/TrEMBL
  D3Z7T7_MOUSE UniProtKB/TrEMBL
  E9PW20 ENTREZGENE, UniProtKB/TrEMBL
  Q2VPR3_MOUSE UniProtKB/TrEMBL
  Q99KL5_MOUSE UniProtKB/TrEMBL
  Q9CY57 ENTREZGENE
  Q9JJ95 ENTREZGENE
UniProt Secondary Q0VBG3 UniProtKB/Swiss-Prot
  Q3U7V6 UniProtKB/Swiss-Prot
  Q3UF43 UniProtKB/Swiss-Prot
  Q3V105 UniProtKB/Swiss-Prot
  Q5XJG9 UniProtKB/Swiss-Prot
  Q8C5N4 UniProtKB/Swiss-Prot
  Q9D7T3 UniProtKB/Swiss-Prot
  Q9DB03 UniProtKB/Swiss-Prot
  Q9DC54 UniProtKB/Swiss-Prot
  Q9JJ95 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-25 Chtop  chromatin target of PRMT1  2500003M10Rik  RIKEN cDNA 2500003M10 gene  Symbol and/or name change 5135510 APPROVED