Slc6a19 (solute carrier family 6 (neurotransmitter transporter), member 19) - Rat Genome Database

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Gene: Slc6a19 (solute carrier family 6 (neurotransmitter transporter), member 19) Mus musculus
Analyze
Symbol: Slc6a19
Name: solute carrier family 6 (neurotransmitter transporter), member 19
RGD ID: 1622255
MGI Page MGI
Description: Enables neutral L-amino acid transmembrane transporter activity. Acts upstream of or within neutral amino acid transport. Located in brush border membrane. Is expressed in blastocyst; cumulus oophorus; early embryo; and metanephros. Used to study Hartnup disease. Human ortholog(s) of this gene implicated in Hartnup disease. Orthologous to human SLC6A19 (solute carrier family 6 member 19).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4632401C08Rik; b(0)AT1; B<0>AT; B<0>AT1; MGC130422; MGC130423; sodium-dependent neutral amino acid transporter B(0)AT1; solute carrier family 6 member 19; system B(0) neutral amino acid transporter AT1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391373,827,864 - 73,848,899 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1373,827,864 - 73,852,984 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381373,679,745 - 73,700,780 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,679,745 - 73,704,865 (-)Ensemblmm10GRCm38
MGSCv371373,818,605 - 73,838,143 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361374,147,159 - 74,166,697 (-)NCBIMGSCv36mm8
Celera1376,010,112 - 76,029,756 (-)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.14NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15044460   PMID:15286787   PMID:15747579   PMID:15804236   PMID:16125675   PMID:16133263  
PMID:16141072   PMID:16141073   PMID:16174864   PMID:16602821   PMID:17167413   PMID:18424768   PMID:19185582   PMID:19521566   PMID:20511718   PMID:20883558   PMID:21267068   PMID:21636576  
PMID:21677750   PMID:21873635   PMID:22677001   PMID:24121511   PMID:25917818   PMID:25973388   PMID:26240152   PMID:30046012   PMID:31470570   PMID:32518324   PMID:35241668   PMID:36374036  
PMID:36611813   PMID:37715952  


Genomics

Comparative Map Data
Slc6a19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391373,827,864 - 73,848,899 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1373,827,864 - 73,852,984 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381373,679,745 - 73,700,780 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,679,745 - 73,704,865 (-)Ensemblmm10GRCm38
MGSCv371373,818,605 - 73,838,143 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361374,147,159 - 74,166,697 (-)NCBIMGSCv36mm8
Celera1376,010,112 - 76,029,756 (-)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.14NCBI
SLC6A19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3851,201,595 - 1,225,111 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl51,201,595 - 1,225,111 (+)Ensemblhg38GRCh38
GRCh3751,201,710 - 1,225,226 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3651,254,766 - 1,275,019 (+)NCBIBuild 36Build 36hg18NCBI36
Celera51,238,608 - 1,262,115 (+)NCBICelera
Cytogenetic Map5p15.33NCBI
HuRef51,183,086 - 1,206,530 (+)NCBIHuRef
CHM1_151,198,248 - 1,225,118 (+)NCBICHM1_1
T2T-CHM13v2.051,108,484 - 1,132,085 (+)NCBIT2T-CHM13v2.0
Slc6a19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8131,414,744 - 31,434,932 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl131,414,744 - 31,433,517 (+)EnsemblGRCr8
mRatBN7.2129,586,191 - 29,604,964 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,586,195 - 29,604,962 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx129,387,324 - 29,406,097 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0135,387,174 - 35,405,947 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,587,954 - 29,606,725 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0132,199,869 - 32,218,628 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl132,199,810 - 32,220,045 (+)Ensemblrn6Rnor6.0
Rnor_5.0133,624,561 - 33,643,496 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4130,393,331 - 30,412,094 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera128,234,184 - 28,252,964 (+)NCBICelera
Cytogenetic Map1p11NCBI
Slc6a19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955504616,768 - 633,654 (+)Ensembl
ChiLan1.0NW_004955504617,683 - 633,594 (+)NCBIChiLan1.0ChiLan1.0
SLC6A19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v241,461,963 - 1,482,056 (+)NCBINHGRI_mPanPan1-v2
PanPan1.1 Ensembl51,248,802 - 1,272,508 (+)EnsemblpanPan2panpan1.1
SLC6A19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13411,329,126 - 11,344,248 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3411,329,111 - 11,344,293 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3415,838,998 - 15,854,198 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03411,229,799 - 11,244,920 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3411,229,784 - 11,244,965 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13411,280,591 - 11,295,588 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03411,260,140 - 11,275,298 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03411,471,162 - 11,486,159 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc6a19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213244,352,755 - 244,371,592 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936815515,762 - 532,917 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936815515,928 - 532,877 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC6A19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1679,293,943 - 79,310,922 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11679,293,940 - 79,310,922 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21685,952,505 - 85,969,441 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC6A19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.141,031,236 - 1,053,815 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl41,033,125 - 1,056,843 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605435,594,889 - 35,615,960 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc6a19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624751591,754 - 607,693 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624751591,846 - 606,362 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc6a19
634 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1853
Count of miRNA genes:698
Interacting mature miRNAs:906
Transcripts:ENSMUST00000022048, ENSMUST00000120322, ENSMUST00000123997, ENSMUST00000124406, ENSMUST00000132085, ENSMUST00000139087, ENSMUST00000140878
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135913260093132738Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368217066102217066Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse

Markers in Region
Slc6a19  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13C1UniSTS
cM Map1340.14UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000022048   ⟹   ENSMUSP00000022048
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,827,864 - 73,848,899 (-)Ensembl
GRCm38.p6 Ensembl1373,679,745 - 73,700,780 (-)Ensembl
Ensembl Acc Id: ENSMUST00000120322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,827,866 - 73,840,755 (-)Ensembl
GRCm38.p6 Ensembl1373,679,747 - 73,692,636 (-)Ensembl
Ensembl Acc Id: ENSMUST00000123997
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,837,206 - 73,852,984 (-)Ensembl
GRCm38.p6 Ensembl1373,689,087 - 73,704,865 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124406   ⟹   ENSMUSP00000119313
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,837,857 - 73,848,800 (-)Ensembl
GRCm38.p6 Ensembl1373,689,738 - 73,700,681 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132085
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,827,866 - 73,848,814 (-)Ensembl
GRCm38.p6 Ensembl1373,679,747 - 73,700,695 (-)Ensembl
Ensembl Acc Id: ENSMUST00000139087
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,837,689 - 73,840,498 (-)Ensembl
GRCm38.p6 Ensembl1373,689,570 - 73,692,379 (-)Ensembl
Ensembl Acc Id: ENSMUST00000140878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,837,895 - 73,840,373 (-)Ensembl
GRCm38.p6 Ensembl1373,689,776 - 73,692,254 (-)Ensembl
RefSeq Acc Id: NM_001359603   ⟹   NP_001346532
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391373,827,864 - 73,840,755 (-)NCBI
GRCm381373,679,745 - 73,692,636 (-)NCBI
Sequence:
RefSeq Acc Id: NM_028878   ⟹   NP_083154
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391373,827,864 - 73,848,899 (-)NCBI
GRCm381373,679,745 - 73,700,780 (-)NCBI
MGSCv371373,818,605 - 73,838,143 (-)RGD
Celera1376,010,112 - 76,029,756 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_083154   ⟸   NM_028878
- Peptide Label: isoform 1
- UniProtKB: Q9D687 (UniProtKB/Swiss-Prot),   Q3KN89 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001346532   ⟸   NM_001359603
- Peptide Label: isoform 2
- UniProtKB: Q3TRY2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000119313   ⟸   ENSMUST00000124406
Ensembl Acc Id: ENSMUSP00000022048   ⟸   ENSMUST00000022048

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D687-F1-model_v2 AlphaFold Q9D687 1-634 view protein structure

Promoters
RGD ID:8680806
Promoter ID:EPDNEW_M18434
Type:initiation region
Name:Slc6a19_2
Description:Mus musculus solute carrier family 6 , member 19 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18435  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381373,689,152 - 73,689,212EPDNEW
RGD ID:8680808
Promoter ID:EPDNEW_M18435
Type:multiple initiation site
Name:Slc6a19_1
Description:Mus musculus solute carrier family 6 , member 19 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18434  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381373,700,695 - 73,700,755EPDNEW
RGD ID:6824404
Promoter ID:MM_KWN:14662
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Kidney
Transcripts:ENSMUST00000120322,   OTTMUST00000065023,   OTTMUST00000065024
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361373,830,051 - 73,830,827 (-)MPROMDB
RGD ID:6824403
Promoter ID:MM_KWN:14664
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000065018,   OTTMUST00000065019,   OTTMUST00000065020,   OTTMUST00000065022
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361373,838,101 - 73,838,902 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921588 AgrOrtholog
Ensembl Genes ENSMUSG00000021565 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000022048 ENTREZGENE
  ENSMUST00000022048.6 UniProtKB/Swiss-Prot
  ENSMUST00000120322 ENTREZGENE
InterPro Na/ntran_symport UniProtKB/Swiss-Prot
  Neutral_aa_SLC6 UniProtKB/Swiss-Prot
  SNS_sf UniProtKB/Swiss-Prot
KEGG Report mmu:74338 UniProtKB/Swiss-Prot
MGD MGI:1921588 ENTREZGENE
NCBI Gene 74338 ENTREZGENE
PANTHER PTHR11616 UniProtKB/Swiss-Prot
  SODIUM-DEPENDENT NEUTRAL AMINO ACID TRANSPORTER B(0)AT1 UniProtKB/Swiss-Prot
Pfam SNF UniProtKB/Swiss-Prot
PhenoGen Slc6a19 PhenoGen
PRINTS NANEUSMPORT UniProtKB/Swiss-Prot
  ORPHTRNSPORT UniProtKB/Swiss-Prot
PROSITE NA_NEUROTRAN_SYMP_1 UniProtKB/Swiss-Prot
  NA_NEUROTRAN_SYMP_3 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF161070 UniProtKB/Swiss-Prot
UniProt D6RJ80_MOUSE UniProtKB/TrEMBL
  Q3KN89 ENTREZGENE, UniProtKB/TrEMBL
  Q3TRY2 ENTREZGENE, UniProtKB/TrEMBL
  Q80Z27_MOUSE UniProtKB/TrEMBL
  Q9D687 ENTREZGENE, UniProtKB/Swiss-Prot