Anks6 (ankyrin repeat and sterile alpha motif domain containing 6) - Rat Genome Database

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Gene: Anks6 (ankyrin repeat and sterile alpha motif domain containing 6) Mus musculus
Analyze
Symbol: Anks6
Name: ankyrin repeat and sterile alpha motif domain containing 6
RGD ID: 1622226
MGI Page MGI
Description: Predicted to enable identical protein binding activity. Acts upstream of or within several processes, including determination of left/right symmetry; heart development; and in utero embryonic development. Located in ciliary inversin compartment. Is expressed in intrahepatic bile duct epithelium; liver; and liver parenchyma. Used to study visceral heterotaxy. Human ortholog(s) of this gene implicated in nephronophthisis 16. Orthologous to human ANKS6 (ankyrin repeat and sterile alpha motif domain containing 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210417J20Rik; Ankrd14; ankyrin repeat and SAM domain-containing protein 6; ankyrin repeat domain 14; b2b1801.1Clo; Gm635; Sam; SAM domain-containing protein 6; SamC; SamCystin; Samd6; sterile alpha motif domain containing 6; sterile alpha motif domain-containing protein 6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39447,015,365 - 47,057,339 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl447,015,669 - 47,057,427 (-)EnsemblGRCm39 Ensembl
GRCm38447,015,365 - 47,057,327 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl447,015,669 - 47,057,427 (-)EnsemblGRCm38mm10GRCm38
MGSCv37447,028,561 - 47,070,178 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36447,036,789 - 47,078,406 (-)NCBIMGSCv36mm8
MGSCv36445,863,232 - 45,905,550 (-)NCBIMGSCv36mm8
Celera447,027,647 - 47,069,458 (-)NCBICelera
Cytogenetic Map4B1NCBI
cM Map425.88NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abdominal situs inversus  (IAGP)
abnormal aortic valve morphology  (IEA)
abnormal bile duct development  (IAGP)
abnormal bile duct epithelium morphology  (IAGP)
abnormal bile duct morphology  (IAGP)
abnormal cholangiocyte primary cilium morphology  (IAGP)
abnormal coronary sinus connection  (IEA)
abnormal heart morphology  (IAGP)
abnormal heart ventricle morphology  (IAGP)
abnormal hepatobiliary system development  (IAGP)
abnormal inferior vena cava morphology  (IEA)
abnormal interatrial septum morphology  (IEA)
abnormal liver morphology  (IEA)
abnormal lung morphology  (IEA)
abnormal Mullerian duct morphology  (IEA)
abnormal portal lobule morphology  (IAGP)
abnormal Wolffian duct morphology  (IEA)
absent ductus venosus valve  (IEA)
anomalous pulmonary venous connection  (IEA)
atrioventricular septal defect  (IAGP)
common atrioventricular valve  (IEA)
common atrium  (IEA)
dextrocardia  (IEA)
dilated bile duct  (IAGP)
dual inferior vena cava  (IEA)
fetal growth retardation  (IEA)
hepatic necrosis  (IAGP)
heterotaxia  (IAGP)
liver fibrosis  (IAGP)
lung situs inversus  (IEA)
overriding aortic valve  (IAGP)
perimembraneous ventricular septal defect  (IEA)
perinatal lethality, complete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IEA)
renal glomerulus cyst  (IAGP)
right atrial isomerism  (IEA)
right pulmonary isomerism  (IAGP)
situs ambiguus  (IAGP)
situs inversus  (IAGP)
small liver  (IAGP)
symmetric azygos veins  (IEA)
transposition of great arteries  (IEA)
ventricular septal defect  (IEA)
References

References - curated
# Reference Title Reference Citation
1. Missense mutation in sterile alpha motif of novel protein SamCystin is associated with polycystic kidney disease in (cy/+) rat. Brown JH, etal., J Am Soc Nephrol. 2005 Dec;16(12):3517-26. Epub 2005 Oct 5.
2. Transgenic overexpression of Anks6(p.R823W) causes polycystic kidney disease in rats. Neudecker S, etal., Am J Pathol. 2010 Dec;177(6):3000-9. doi: 10.2353/ajpath.2010.100569.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Characterization of the Han:SPRD rat model for hereditary polycystic kidney disease. Schafer K, etal., Kidney Int 1994 Jul;46(1):134-52.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693   PMID:19324013  
PMID:21267068   PMID:21565611   PMID:21677750   PMID:21873635   PMID:25599650   PMID:25807483   PMID:26039630   PMID:26327442   PMID:27002738   PMID:27114383   PMID:27626380   PMID:27996060  
PMID:28185240   PMID:29395339   PMID:29539633   PMID:30973865   PMID:31041607   PMID:32886109   PMID:35032404   PMID:38355793  


Genomics

Comparative Map Data
Anks6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39447,015,365 - 47,057,339 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl447,015,669 - 47,057,427 (-)EnsemblGRCm39 Ensembl
GRCm38447,015,365 - 47,057,327 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl447,015,669 - 47,057,427 (-)EnsemblGRCm38mm10GRCm38
MGSCv37447,028,561 - 47,070,178 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36447,036,789 - 47,078,406 (-)NCBIMGSCv36mm8
MGSCv36445,863,232 - 45,905,550 (-)NCBIMGSCv36mm8
Celera447,027,647 - 47,069,458 (-)NCBICelera
Cytogenetic Map4B1NCBI
cM Map425.88NCBI
ANKS6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38998,732,009 - 98,796,555 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl998,731,329 - 98,796,965 (-)EnsemblGRCh38hg38GRCh38
GRCh379101,494,291 - 101,558,837 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369100,534,112 - 100,598,615 (-)NCBINCBI36Build 36hg18NCBI36
Build 34998,573,856 - 98,638,050NCBI
Celera972,008,186 - 72,066,777 (-)NCBICelera
Cytogenetic Map9q22.33NCBI
HuRef971,093,661 - 71,157,912 (-)NCBIHuRef
CHM1_19101,640,709 - 101,705,196 (-)NCBICHM1_1
T2T-CHM13v2.09110,903,669 - 110,968,205 (-)NCBIT2T-CHM13v2.0
Anks6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8566,104,770 - 66,146,186 (-)NCBIGRCr8
mRatBN7.2561,309,183 - 61,350,596 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl561,309,183 - 61,350,596 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx563,280,885 - 63,322,477 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0565,100,188 - 65,141,780 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0565,069,677 - 65,111,269 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0562,642,974 - 62,684,387 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl562,640,645 - 62,683,964 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0567,163,440 - 67,204,853 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4563,633,540 - 63,674,953 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1563,632,332 - 63,674,981 (-)NCBI
Celera559,865,938 - 59,907,349 (-)NCBICelera
Cytogenetic Map5q22NCBI
Anks6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541926,801,925 - 26,851,627 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541926,801,924 - 26,852,116 (+)NCBIChiLan1.0ChiLan1.0
ANKS6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21140,660,886 - 40,725,561 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1940,663,262 - 40,734,626 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0969,818,669 - 69,886,618 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1997,941,270 - 98,002,933 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl997,941,935 - 98,005,795 (-)Ensemblpanpan1.1panPan2
ANKS6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11155,845,695 - 55,893,253 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1155,847,808 - 55,893,257 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1154,278,371 - 54,325,978 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01156,955,274 - 57,003,309 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1156,957,377 - 57,003,582 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11155,459,214 - 55,507,459 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01155,483,554 - 55,531,201 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01156,180,571 - 56,231,006 (-)NCBIUU_Cfam_GSD_1.0
Anks6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947170,772,429 - 170,816,534 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365247,320,497 - 7,357,350 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365247,320,069 - 7,379,417 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKS6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1240,522,837 - 240,584,496 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11240,522,835 - 240,584,354 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21268,768,030 - 268,829,559 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKS6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11240,631,235 - 40,695,920 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1240,631,467 - 40,697,393 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603837,666,107 - 37,730,231 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Anks6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248252,157,158 - 2,212,971 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248252,157,158 - 2,214,115 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Anks6
1611 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1443
Count of miRNA genes:530
Interacting mature miRNAs:642
Transcripts:ENSMUST00000084616, ENSMUST00000107747, ENSMUST00000152479, ENSMUST00000154664
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
10412178Habiir2_mhyperoxic acute lung injury imprinted region 2 (mouse)Not determined43945212663283678Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
1301697Sluc18_msusceptibility to lung cancer 18 (mouse)Not determined42237344856373612Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
1558794Agnm1_mautoimmune glomerulonephritis in MRL 1 (mouse)Not determined44633264655755867Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
10449022Aanq1_maristolochic acid nephrotoxicity QTL 1 (mouse)44660382680603826Mouse
1300977Mopkd1_mmodifier of polycystic kidney disease progression 1 (mouse)Not determined43655083970550967Mouse
1301237Alcp7_malcohol preference locus 7 (mouse)Not determined41739516051395290Mouse
1301941Mmtg1_mmodifier of mammary tumor growth 1 (mouse)Not determined44565844283099157Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
1302075Bdln6_mbody length 6 (mouse)Not determined42237344856373612Mouse
12879977Bod2_mbone length and organs 2 (mouse)44628353180283678Mouse
1301437Scon1_msucrose consumption 1 (mouse)Not determined42237344856373612Mouse
10043880Adip23_madiposity 23 (mouse)Not determined44628353180283678Mouse
1300769Pcyts2_mplasmacytoma susceptibility 2 (mouse)Not determined42211194456112145Mouse
1301792Hdlq10_mHDL QTL 10 (mouse)Not determined43585970769859853Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
1301990Arvm1_mautoimmune renal vasculitis 1 (mouse)Not determined42933264663332776Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
1302116Bbaa1_mB.burgdorferi-associated arthritis 1 (mouse)Not determined43825093072251078Mouse
1302058Hrtfm3_mheart failure modifier 3 (mouse)Not determined42211194456112145Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001024136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_151464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003955034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK008967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL831741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC072562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000084616   ⟹   ENSMUSP00000081665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl447,015,689 - 47,057,306 (-)Ensembl
GRCm38.p6 Ensembl447,015,689 - 47,057,306 (-)Ensembl
Ensembl Acc Id: ENSMUST00000107747   ⟹   ENSMUSP00000103376
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl447,015,669 - 47,057,306 (-)Ensembl
GRCm38.p6 Ensembl447,015,669 - 47,057,306 (-)Ensembl
Ensembl Acc Id: ENSMUST00000152479
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl447,017,000 - 47,025,710 (-)Ensembl
GRCm38.p6 Ensembl447,017,000 - 47,025,710 (-)Ensembl
Ensembl Acc Id: ENSMUST00000154664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl447,038,425 - 47,040,143 (-)Ensembl
GRCm38.p6 Ensembl447,038,425 - 47,040,143 (-)Ensembl
Ensembl Acc Id: ENSMUST00000229609   ⟹   ENSMUSP00000155271
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl447,016,128 - 47,057,427 (-)Ensembl
GRCm38.p6 Ensembl447,016,128 - 47,057,427 (-)Ensembl
RefSeq Acc Id: NM_001024136   ⟹   NP_001019307
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39447,015,669 - 47,057,306 (-)NCBI
GRCm38447,015,669 - 47,057,306 (-)NCBI
MGSCv37447,028,561 - 47,070,178 (-)RGD
Celera447,027,647 - 47,069,458 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001356426   ⟹   NP_001343355
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39447,015,669 - 47,057,306 (-)NCBI
GRCm38447,015,669 - 47,057,306 (-)NCBI
Sequence:
RefSeq Acc Id: NR_151464
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39447,015,669 - 47,057,306 (-)NCBI
GRCm38447,015,669 - 47,057,306 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006538333   ⟹   XP_006538396
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39447,015,365 - 47,057,339 (-)NCBI
GRCm38447,015,365 - 47,057,327 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006538334   ⟹   XP_006538397
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39447,015,365 - 47,057,339 (-)NCBI
GRCm38447,015,365 - 47,057,327 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006538337   ⟹   XP_006538400
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39447,025,812 - 47,057,339 (-)NCBI
GRCm38447,025,805 - 47,057,327 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006538338   ⟹   XP_006538401
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39447,039,875 - 47,057,339 (-)NCBI
GRCm38447,039,875 - 47,057,327 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003955034
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39447,015,365 - 47,057,339 (-)NCBI
GRCm38447,015,365 - 47,057,327 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941999
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39447,015,365 - 47,057,339 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942000
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39447,015,365 - 47,057,339 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001019307   ⟸   NM_001024136
- Peptide Label: isoform 2
- UniProtKB: E9PUD3 (UniProtKB/TrEMBL),   A2ANT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006538397   ⟸   XM_006538334
- Peptide Label: isoform X2
- UniProtKB: A2ANT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006538396   ⟸   XM_006538333
- Peptide Label: isoform X1
- UniProtKB: A2ANT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006538400   ⟸   XM_006538337
- Peptide Label: isoform X3
- UniProtKB: A2ANT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006538401   ⟸   XM_006538338
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: NP_001343355   ⟸   NM_001356426
- Peptide Label: isoform 1
- UniProtKB: Q6GQX6 (UniProtKB/Swiss-Prot),   A2ANT9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000081665   ⟸   ENSMUST00000084616
Ensembl Acc Id: ENSMUSP00000103376   ⟸   ENSMUST00000107747
Ensembl Acc Id: ENSMUSP00000155271   ⟸   ENSMUST00000229609
Protein Domains
SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6GQX6-F1-model_v2 AlphaFold Q6GQX6 1-883 view protein structure

Promoters
RGD ID:6834878
Promoter ID:MM_KWN:37536
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000015582
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36447,052,341 - 47,052,841 (-)MPROMDB
RGD ID:6883366
Promoter ID:EPDNEW_M5134
Type:single initiation site
Name:Anks6_2
Description:Mus musculus ankyrin repeat and sterile alpha motif domain containing6 , transcript variant 3, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5135  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38447,057,016 - 47,057,076EPDNEW
RGD ID:6883368
Promoter ID:EPDNEW_M5135
Type:initiation region
Name:Anks6_1
Description:Mus musculus ankyrin repeat and sterile alpha motif domain containing6 , transcript variant 3, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5134  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38447,057,334 - 47,057,394EPDNEW
RGD ID:6834877
Promoter ID:MM_KWN:37538
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000098085,   ENSMUST00000107747,   NM_001024136
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36447,069,831 - 47,070,482 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922941 AgrOrtholog
Ensembl Genes ENSMUSG00000066191 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000084616 ENTREZGENE
  ENSMUST00000084616.3 UniProtKB/TrEMBL
  ENSMUST00000107747 ENTREZGENE
  ENSMUST00000107747.8 UniProtKB/TrEMBL
  ENSMUST00000229609 ENTREZGENE
  ENSMUST00000229609.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin-KH/SAM_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:75691 UniProtKB/TrEMBL
MGD MGI:1922941 ENTREZGENE
NCBI Gene 75691 ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 17 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MASK PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Anks6 PhenoGen
PRINTS ANKYRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2ANT9 ENTREZGENE, UniProtKB/TrEMBL
  ANKS6_MOUSE UniProtKB/Swiss-Prot
  E9PUD3 ENTREZGENE, UniProtKB/TrEMBL
  Q6GQX6 ENTREZGENE