Mdfi (MyoD family inhibitor) - Rat Genome Database

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Gene: Mdfi (MyoD family inhibitor) Mus musculus
Analyze
Symbol: Mdfi
Name: MyoD family inhibitor
RGD ID: 1621612
MGI Page MGI
Description: Enables DNA-binding transcription factor binding activity. Involved in dorsal/ventral axis specification; negative regulation of transcription by RNA polymerase II; and regulation of signal transduction. Acts upstream of or within embryonic skeletal system morphogenesis and trophoblast giant cell differentiation. Located in nucleus. Is expressed in several structures, including medulla oblongata basal plate mantle layer; placenta; sensory organ; skeleton; and trophectoderm. Orthologous to human MDFI (MyoD family inhibitor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: I-m; I-mf; I-mfa; myogenic repressor I-mf
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391748,126,253 - 48,145,616 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1748,126,253 - 48,145,616 (-)EnsemblGRCm39 Ensembl
GRCm381747,815,328 - 47,834,691 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1747,815,328 - 47,834,691 (-)EnsemblGRCm38mm10GRCm38
MGSCv371747,952,281 - 47,971,640 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361747,278,521 - 47,296,414 (-)NCBIMGSCv36mm8
Celera1751,252,441 - 51,271,814 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1723.99NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleus  (IBA,IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8797820   PMID:9250874   PMID:9799236   PMID:10403781   PMID:10495887   PMID:11238923   PMID:12192039   PMID:12226475   PMID:12466851   PMID:12477932   PMID:14530267   PMID:15207726  
PMID:15465018   PMID:15489334   PMID:16301527   PMID:16581799   PMID:17090604   PMID:18791226   PMID:18799693   PMID:19228596   PMID:20589882   PMID:21267068   PMID:21873635   PMID:23770672  
PMID:28049832   PMID:28369354   PMID:31550482   PMID:31984795   PMID:35103284   PMID:37267696  


Genomics

Comparative Map Data
Mdfi
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391748,126,253 - 48,145,616 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1748,126,253 - 48,145,616 (-)EnsemblGRCm39 Ensembl
GRCm381747,815,328 - 47,834,691 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1747,815,328 - 47,834,691 (-)EnsemblGRCm38mm10GRCm38
MGSCv371747,952,281 - 47,971,640 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361747,278,521 - 47,296,414 (-)NCBIMGSCv36mm8
Celera1751,252,441 - 51,271,814 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1723.99NCBI
MDFI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38641,637,018 - 41,654,244 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl641,636,882 - 41,654,244 (+)EnsemblGRCh38hg38GRCh38
GRCh37641,604,756 - 41,621,982 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36641,714,231 - 41,729,959 (+)NCBINCBI36Build 36hg18NCBI36
Build 34641,714,230 - 41,729,959NCBI
Celera643,159,635 - 43,175,423 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef641,324,752 - 41,340,811 (+)NCBIHuRef
CHM1_1641,609,581 - 41,625,365 (+)NCBICHM1_1
T2T-CHM13v2.0641,466,001 - 41,482,783 (+)NCBIT2T-CHM13v2.0
Mdfi
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8920,654,359 - 20,672,768 (+)NCBIGRCr8
mRatBN7.2913,156,806 - 13,175,218 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl913,156,866 - 13,175,217 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx921,737,108 - 21,755,325 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0926,802,796 - 26,821,116 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0925,100,495 - 25,118,716 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0915,166,118 - 15,184,469 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl915,166,118 - 15,184,468 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0914,090,319 - 14,108,949 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.498,623,038 - 8,641,388 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera910,909,226 - 10,927,422 (+)NCBICelera
Cytogenetic Map9q12NCBI
Mdfi
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554378,069,326 - 8,081,866 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554378,071,054 - 8,081,811 (+)NCBIChiLan1.0ChiLan1.0
MDFI
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2556,130,206 - 56,147,298 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1651,999,935 - 52,017,319 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0641,222,123 - 41,239,474 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1642,527,805 - 42,545,030 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl642,527,805 - 42,545,030 (+)Ensemblpanpan1.1panPan2
MDFI
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11210,324,499 - 10,339,699 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1210,323,552 - 10,339,697 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1210,354,136 - 10,369,345 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01210,804,583 - 10,819,789 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1210,803,705 - 10,819,787 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11210,335,575 - 10,350,774 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01210,419,255 - 10,434,468 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01210,513,236 - 10,528,430 (+)NCBIUU_Cfam_GSD_1.0
Mdfi
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494645,683,982 - 45,697,549 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647618,263,194 - 18,275,935 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647618,262,662 - 18,276,159 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MDFI
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl736,830,394 - 36,846,993 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1736,829,060 - 36,846,995 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2742,124,089 - 42,142,019 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MDFI
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11730,508,354 - 30,526,065 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1730,509,047 - 30,524,024 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604441,629,354 - 41,649,335 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mdfi
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475417,375,714 - 17,387,919 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475417,377,369 - 17,389,349 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mdfi
1124 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2377
Count of miRNA genes:613
Interacting mature miRNAs:767
Transcripts:ENSMUST00000035375, ENSMUST00000066368, ENSMUST00000113280, ENSMUST00000125745, ENSMUST00000129360, ENSMUST00000131971, ENSMUST00000132125, ENSMUST00000140234, ENSMUST00000152455
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173311897454107028Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173517581770165926Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173596629469966424Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173678974370789743Mouse
1300592Pcyts5_mplasmacytoma susceptibility 5 (mouse)Not determined173871288772712970Mouse
10755525Lymph2_mlymphocyte differential 2 (mouse)173880562672805626Mouse
10755534Lymph4_mlymphocyte differential 4 (mouse)173880562672805626Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4053444774534623Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174093918774939187Mouse
4141478Hbnr7_mHeligmosomoides bakeri nematode resistance 7 (mouse)Not determined4305118551739122Mouse
26884386Skwq13_mskull length QTL 13, 16 week (mouse)174371089153107028Mouse
26884390Skwq9_mskull length QTL 9, 10 week (mouse)174371089167806995Mouse
12903997Cfq4_mconditioned fear QTL 4 (mouse)174501655249366402Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174651092682407429Mouse
35673315Ari1_mantibody response to influenza 1, day 7, IgG2a+IgG2c (mouse)174731092654707028Mouse

Markers in Region
U57821  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381747,819,813 - 47,819,932UniSTSGRCm38
MGSCv371747,956,762 - 47,956,881UniSTSGRCm37
Celera1751,256,919 - 51,257,038UniSTS
Cytogenetic Map17CUniSTS
cM Map1724.0UniSTS
Whitehead/MRC_RH17585.47UniSTS
Mdfi  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17CUniSTS
cM Map1723.99UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001276390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001276391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA048074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AA049446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC113536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI325040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV360686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ832230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY097762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX564914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U57820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U57821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U57822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  W54345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  W65565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000035375   ⟹   ENSMUSP00000037888
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1748,126,261 - 48,144,216 (-)Ensembl
GRCm38.p6 Ensembl1747,815,336 - 47,833,291 (-)Ensembl
RefSeq Acc Id: ENSMUST00000066368   ⟹   ENSMUSP00000069915
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1748,126,253 - 48,145,616 (-)Ensembl
GRCm38.p6 Ensembl1747,815,328 - 47,834,691 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113280   ⟹   ENSMUSP00000108905
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1748,126,253 - 48,144,166 (-)Ensembl
GRCm38.p6 Ensembl1747,815,328 - 47,833,241 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125745
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1748,126,846 - 48,144,183 (-)Ensembl
GRCm38.p6 Ensembl1747,815,921 - 47,833,258 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129360   ⟹   ENSMUSP00000114930
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1748,135,524 - 48,144,155 (-)Ensembl
GRCm38.p6 Ensembl1747,824,599 - 47,833,230 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131971   ⟹   ENSMUSP00000120454
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1748,126,964 - 48,144,094 (-)Ensembl
GRCm38.p6 Ensembl1747,816,039 - 47,833,169 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132125   ⟹   ENSMUSP00000114581
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1748,131,851 - 48,144,170 (-)Ensembl
GRCm38.p6 Ensembl1747,820,926 - 47,833,245 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140234
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1748,130,723 - 48,144,186 (-)Ensembl
GRCm38.p6 Ensembl1747,819,798 - 47,833,261 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152455   ⟹   ENSMUSP00000117665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1748,131,762 - 48,144,197 (-)Ensembl
GRCm38.p6 Ensembl1747,820,837 - 47,833,272 (-)Ensembl
RefSeq Acc Id: NM_001109973   ⟹   NP_001103443
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391748,126,253 - 48,145,616 (-)NCBI
GRCm381747,815,328 - 47,834,691 (-)NCBI
MGSCv371747,952,281 - 47,971,640 (-)RGD
Celera1751,252,437 - 51,271,814 (-)NCBI
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001276390   ⟹   NP_001263319
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391748,126,253 - 48,144,216 (-)NCBI
GRCm381747,815,328 - 47,833,291 (-)NCBI
Celera1751,252,437 - 51,271,814 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001276391   ⟹   NP_001263320
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391748,126,253 - 48,144,216 (-)NCBI
GRCm381747,815,328 - 47,833,291 (-)NCBI
Celera1751,252,437 - 51,271,814 (-)NCBI
Sequence:
RefSeq Acc Id: NM_010783   ⟹   NP_034913
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391748,126,253 - 48,144,216 (-)NCBI
GRCm381747,815,328 - 47,833,291 (-)NCBI
MGSCv371747,952,281 - 47,971,640 (-)RGD
Celera1751,252,437 - 51,271,814 (-)NCBI
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006523742   ⟹   XP_006523805
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391748,126,255 - 48,141,621 (-)NCBI
GRCm381747,815,330 - 47,830,696 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523743   ⟹   XP_006523806
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391748,130,697 - 48,144,210 (-)NCBI
GRCm381747,819,792 - 47,833,285 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523744   ⟹   XP_006523807
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391748,130,696 - 48,145,611 (-)NCBI
GRCm381747,819,792 - 47,834,686 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523745   ⟹   XP_006523808
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391748,130,696 - 48,144,233 (-)NCBI
GRCm381747,819,791 - 47,833,308 (-)NCBI
Sequence:
RefSeq Acc Id: NP_034913   ⟸   NM_010783
- Peptide Label: isoform 1
- UniProtKB: P70331 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001103443   ⟸   NM_001109973
- Peptide Label: isoform 1
- UniProtKB: P70331 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001263320   ⟸   NM_001276391
- Peptide Label: isoform 2 precursor
- Sequence:
RefSeq Acc Id: NP_001263319   ⟸   NM_001276390
- Peptide Label: isoform 1
- UniProtKB: P70331 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006523805   ⟸   XM_006523742
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006523807   ⟸   XM_006523744
- Peptide Label: isoform X2
- UniProtKB: Q5XK64 (UniProtKB/Swiss-Prot),   P70332 (UniProtKB/Swiss-Prot),   P70330 (UniProtKB/Swiss-Prot),   Q99JM9 (UniProtKB/Swiss-Prot),   P70331 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006523808   ⟸   XM_006523745
- Peptide Label: isoform X2
- UniProtKB: Q5XK64 (UniProtKB/Swiss-Prot),   P70332 (UniProtKB/Swiss-Prot),   P70330 (UniProtKB/Swiss-Prot),   Q99JM9 (UniProtKB/Swiss-Prot),   P70331 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006523806   ⟸   XM_006523743
- Peptide Label: isoform X2
- UniProtKB: Q5XK64 (UniProtKB/Swiss-Prot),   P70332 (UniProtKB/Swiss-Prot),   P70330 (UniProtKB/Swiss-Prot),   Q99JM9 (UniProtKB/Swiss-Prot),   P70331 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000069915   ⟸   ENSMUST00000066368
RefSeq Acc Id: ENSMUSP00000108905   ⟸   ENSMUST00000113280
RefSeq Acc Id: ENSMUSP00000117665   ⟸   ENSMUST00000152455
RefSeq Acc Id: ENSMUSP00000114581   ⟸   ENSMUST00000132125
RefSeq Acc Id: ENSMUSP00000120454   ⟸   ENSMUST00000131971
RefSeq Acc Id: ENSMUSP00000114930   ⟸   ENSMUST00000129360
RefSeq Acc Id: ENSMUSP00000037888   ⟸   ENSMUST00000035375

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P70331-F1-model_v2 AlphaFold P70331 1-251 view protein structure

Promoters
RGD ID:13676326
Promoter ID:EPDNEW_M22312
Type:initiation region
Name:Mdfi_1
Description:Mus musculus MyoD family inhibitor , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22313  EPDNEW_M22314  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381747,833,249 - 47,833,309EPDNEW
RGD ID:13676328
Promoter ID:EPDNEW_M22313
Type:initiation region
Name:Mdfi_2
Description:Mus musculus MyoD family inhibitor , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22312  EPDNEW_M22314  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381747,834,528 - 47,834,588EPDNEW
RGD ID:13676330
Promoter ID:EPDNEW_M22314
Type:initiation region
Name:Mdfi_3
Description:Mus musculus MyoD family inhibitor , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22312  EPDNEW_M22313  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381747,834,687 - 47,834,747EPDNEW
RGD ID:6828341
Promoter ID:MM_KWN:23735
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B4
Transcripts:ENSMUST00000113280,   OTTMUST00000044323,   OTTMUST00000044325,   OTTMUST00000044326,   OTTMUST00000044328,   OTTMUST00000057657,   UC008CWH.1,   UC008CWK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361747,970,101 - 47,970,601 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107687 AgrOrtholog
Ensembl Genes ENSMUSG00000032717 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035375 ENTREZGENE
  ENSMUST00000035375.14 UniProtKB/Swiss-Prot
  ENSMUST00000066368 ENTREZGENE
  ENSMUST00000066368.13 UniProtKB/Swiss-Prot
  ENSMUST00000113280.8 UniProtKB/TrEMBL
  ENSMUST00000129360.2 UniProtKB/TrEMBL
  ENSMUST00000131971.2 UniProtKB/TrEMBL
  ENSMUST00000132125.8 UniProtKB/TrEMBL
  ENSMUST00000140234 ENTREZGENE
  ENSMUST00000152455.8 UniProtKB/TrEMBL
InterPro MDFI/MDFIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17240 UniProtKB/Swiss-Prot
MGD MGI:107687 ENTREZGENE
NCBI Gene 17240 ENTREZGENE
PANTHER MYOD FAMILY INHIBITOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15304 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MDFI UniProtKB/TrEMBL
PhenoGen Mdfi PhenoGen
UniProt D3YUT8_MOUSE UniProtKB/TrEMBL
  D3YVA0_MOUSE UniProtKB/TrEMBL
  D3YZ53_MOUSE UniProtKB/TrEMBL
  D3Z3N7_MOUSE UniProtKB/TrEMBL
  D3Z6Q8_MOUSE UniProtKB/TrEMBL
  MDFI_MOUSE UniProtKB/Swiss-Prot
  P70330 ENTREZGENE
  P70331 ENTREZGENE
  P70332 ENTREZGENE
  Q5XK64 ENTREZGENE
  Q99JM9 ENTREZGENE
UniProt Secondary P70330 UniProtKB/Swiss-Prot
  P70332 UniProtKB/Swiss-Prot
  Q5XK64 UniProtKB/Swiss-Prot
  Q99JM9 UniProtKB/Swiss-Prot