Cfap53 (cilia and flagella associated protein 53) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Cfap53 (cilia and flagella associated protein 53) Mus musculus
Analyze
Symbol: Cfap53
Name: cilia and flagella associated protein 53
RGD ID: 1621480
MGI Page MGI
Description: Involved in manchette assembly and sperm flagellum assembly. Acts upstream of or within epithelial cilium movement involved in extracellular fluid movement; establishment of localization in cell; and protein localization to motile cilium. Located in cytoskeleton; glial cell projection; and motile cilium. Is active in axonemal A tubule inner sheath and sperm flagellum. Human ortholog(s) of this gene implicated in visceral heterotaxy 6. Orthologous to human CFAP53 (cilia and flagella associated protein 53).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933415I03Rik; Ccdc11; cilia- and flagella-associated protein 53; coiled-coil domain containing 11; coiled-coil domain-containing protein 11; MGC117752
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391874,416,171 - 74,493,055 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1874,416,161 - 74,493,057 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381874,283,100 - 74,359,984 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1874,283,090 - 74,359,986 (+)Ensemblmm10GRCm38
MGSCv371874,442,754 - 74,519,638 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361874,408,469 - 74,485,351 (+)NCBIMGSCv36mm8
Celera1875,512,454 - 75,592,877 (+)NCBICelera
Cytogenetic Map18E2NCBI
cM Map1850.7NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abdominal situs ambiguus  (IEA)
abnormal azygos vein topology  (IEA)
abnormal ductus venosus valve morphology  (IEA)
abnormal hypoglossal nerve topology  (IEA)
abnormal inferior vena cava valve morphology  (IEA)
abnormal intrathoracic topology of vagus nerve  (IEA)
abnormal liver morphology  (IEA)
abnormal Mullerian duct morphology  (IEA)
abnormal ovary topology  (IEA)
abnormal placenta morphology  (IAGP)
abnormal placental labyrinth vasculature morphology  (IAGP)
abnormal sperm axoneme morphology  (IAGP)
abnormal sperm flagellum morphology  (IAGP)
abnormal sperm head morphology  (IAGP)
abnormal spermatogenesis  (IAGP)
abnormal superior mesenteric vein topology  (IEA)
abnormal thymus topology  (IEA)
abnormal ventral pancreas topology  (IEA)
abnormal vertebral artery topology  (IEA)
absent ductus venosus valve  (IEA)
absent intrahepatic inferior vena cava segment  (IEA)
absent sperm flagellum  (IAGP)
anomalous pulmonary venous connection  (IEA)
blood in lymph vessels  (IEA)
coiled sperm flagellum  (IAGP)
common atrium  (IEA)
decreased body weight  (IAGP)
dilated liver sinusoidal space  (IEA)
double inlet heart right ventricle  (IEA)
double outlet left ventricle  (IEA)
dual inferior vena cava  (IEA)
elongated manchette  (IAGP)
epidermal cyst  (IEA)
hepatic portal vein stenosis  (IEA)
herniated liver  (IEA)
hydrocephaly  (IAGP)
increased grip strength  (IEA)
inverse situs of great intrathoracic arteries  (IEA)
left pulmonary isomerism  (IEA)
male infertility  (IAGP)
muscular ventricular septal defect  (IEA)
oligozoospermia  (IAGP)
perimembraneous ventricular septal defect  (IEA)
placenta hemorrhage  (IAGP)
placenta necrosis  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, incomplete penetrance  (IAGP)
retropleural edema  (IEA)
short sperm flagellum  (IAGP)
situs ambiguus  (IEA)
situs inversus  (IAGP)
situs inversus totalis  (IAGP)
small spleen  (IEA)
small superior cervical ganglion  (IEA)
subcutaneous edema  (IEA)
symmetric azygos veins  (IEA)
thoracoschisis  (IEA)
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750  
PMID:29539633   PMID:30973865   PMID:33347437   PMID:33473114   PMID:34124066   PMID:35587122   PMID:37295417   PMID:37865089   PMID:37890489   PMID:37989994   PMID:38355793   PMID:39007638  


Genomics

Comparative Map Data
Cfap53
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391874,416,171 - 74,493,055 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1874,416,161 - 74,493,057 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381874,283,100 - 74,359,984 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1874,283,090 - 74,359,986 (+)Ensemblmm10GRCm38
MGSCv371874,442,754 - 74,519,638 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361874,408,469 - 74,485,351 (+)NCBIMGSCv36mm8
Celera1875,512,454 - 75,592,877 (+)NCBICelera
Cytogenetic Map18E2NCBI
cM Map1850.7NCBI
CFAP53
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381850,227,193 - 50,266,495 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1850,227,193 - 50,266,504 (-)Ensemblhg38GRCh38
GRCh371847,753,563 - 47,792,865 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361846,007,561 - 46,046,863 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341846,007,561 - 46,046,863NCBI
Celera1844,610,119 - 44,649,420 (-)NCBICelera
Cytogenetic Map18q21.1NCBI
HuRef1844,607,962 - 44,647,310 (-)NCBIHuRef
CHM1_11847,749,177 - 47,788,454 (-)NCBICHM1_1
T2T-CHM13v2.01850,428,917 - 50,468,237 (-)NCBIT2T-CHM13v2.0
Cfap53
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81870,159,900 - 70,227,543 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1870,159,898 - 70,227,540 (+)EnsemblGRCr8
mRatBN7.21867,884,651 - 67,955,873 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1867,869,855 - 67,952,318 (+)EnsemblmRatBN7.2
Rnor_6.01870,263,290 - 70,330,420 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1870,263,359 - 70,329,907 (+)Ensemblrn6Rnor6.0
Rnor_5.01869,404,834 - 69,472,256 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41871,083,103 - 71,151,732 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1866,062,639 - 66,130,812 (+)NCBICelera
RGSC_v3.11871,156,303 - 71,224,840 (+)NCBI
Cytogenetic Map18q12.2NCBI
Cfap53
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540235,295,007 - 35,318,799 (-)Ensembl
ChiLan1.0NW_00495540235,295,007 - 35,318,800 (-)NCBIChiLan1.0ChiLan1.0
CFAP53
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21767,745,110 - 67,794,635 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11853,437,712 - 53,487,223 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01843,597,731 - 43,647,238 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11846,955,364 - 46,994,771 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1846,955,364 - 46,994,771 (-)EnsemblpanPan2panpan1.1
CFAP53
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1778,612,226 - 78,649,518 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl778,597,746 - 78,651,472 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha778,016,600 - 78,053,886 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0778,676,021 - 78,712,393 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl778,676,053 - 78,714,335 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1778,388,670 - 78,425,967 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0778,421,092 - 78,457,453 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0778,705,819 - 78,742,179 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cfap53
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494437,629,614 - 37,657,164 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649712,874,266 - 12,896,739 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493649712,868,583 - 12,896,322 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP53
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl199,850,562 - 99,900,136 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1199,848,184 - 99,900,001 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21109,565,317 - 109,589,418 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP53
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11830,690,451 - 30,731,711 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1830,691,006 - 30,725,354 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660504,837,720 - 4,878,740 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap53
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477813,839,310 - 13,891,714 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477813,841,227 - 13,891,946 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cfap53
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11557,600,995 - 57,666,412 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cfap53
3217 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:880
Count of miRNA genes:435
Interacting mature miRNAs:496
Transcripts:ENSMUST00000114895, ENSMUST00000176435, ENSMUST00000176766, ENSMUST00000177101, ENSMUST00000177407
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
1558803W3q16_mweight 3 weeks QTL 16 (mouse)Not determined186127244881491831Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse
1302109Sluc28_msusceptibility to lung cancer 28 (mouse)Not determined185993532190720763Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
4142443Pgis1_mproteoglycan induced spondylitis 1 (mouse)Not determined185329102276914293Mouse
4140971Mbmq1_mmale body mass QTL 1 (mouse)Not determined5799028190720763Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184331112077311343Mouse
12880410V125Dq13_mvitamin D active form serum level QTL 13 (mouse)185643307190433071Mouse
4142239Idd21.2_minsulin dependent diabetes susceptibility 21.2 (mouse)Not determined186127244874562414Mouse
15014786Mvlq2_mmacrovesicular liver lesion QTL 2 (mouse)187156938890720763Mouse
12880428V125Dq14_mvitamin D active form serum level QTL 14 (mouse)185743307190720763Mouse
1558782Orgwq9_morgan weight QTL 9 (mouse)Not determined186127244882604728Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185105215685052311Mouse
12880430Fgf23lq4_mFGF23 serum level QTL 4 (mouse)185643307190433071Mouse
1301368Par2_mpulmonary adenoma resistance 2 (mouse)Not determined187036233376707156Mouse
11039492Ltpr8a_mLeishmania tropica response 8a (mouse)185918009290720763Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184642328780423287Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184687490380875042Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184687490380875042Mouse
10401904Sicd4_mseizure-induced cell death 4 (mouse)Not determined186980527685514143Mouse
1301500Szs4_mseizure susceptibility 4 (mouse)Not determined185497587385514143Mouse
11039495Ltpr8c_mLeishmania tropica response 8c (mouse)185918009290720763Mouse
4141132Eae18_mexperimental allergic encephalomyelitis susceptibility 18 (mouse)Not determined5759055982604728Mouse
11049564Lmr29_mleishmaniasis resistance 29 (mouse)185918009290720763Mouse
38455998Cdtm1_mCD62L+ CD8 TM cells 1 (mouse)186013307280043215Mouse
1302183Pas7_mpulmonary adenoma susceptibility 7 (mouse)Not determined187274559484144595Mouse
1301798Hdlq31_mHDL QTL 31 (mouse)Not determined186714438990720763Mouse
11039518Ltpr8_mLeishmania tropica response 8 (mouse)186387490376180241Mouse
1301353Lbw6_mlupus NZB x NZW 6 (mouse)Not determined185756233890720763Mouse
1301103Pgia11_mproteoglycan induced arthritis 11 (mouse)Not determined185991418490720763Mouse

Markers in Region
AA763521  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381874,309,926 - 74,310,017UniSTSGRCm38
MGSCv371874,469,580 - 74,469,671UniSTSGRCm37
Celera1875,539,549 - 75,539,640UniSTS
Cytogenetic Map18E2UniSTS
Whitehead/MRC_RH18916.6UniSTS
Fabp5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38957,484,095 - 57,484,324UniSTSGRCm38
GRCm381874,303,572 - 74,303,799UniSTSGRCm38
MGSCv371874,463,226 - 74,463,453UniSTSGRCm37
MGSCv37957,331,902 - 57,332,131UniSTSGRCm37
Celera1875,533,199 - 75,533,426UniSTS
Celera954,719,745 - 54,719,974UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map3A1-A3UniSTS
cM Map3 UniSTS
AF072240  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381874,282,063 - 74,282,211UniSTSGRCm38
MGSCv371874,441,717 - 74,441,865UniSTSGRCm37
Celera1875,511,412 - 75,511,560UniSTS
Cytogenetic Map18E2UniSTS
cM Map1845.0UniSTS
Whitehead/MRC_RH18908.03UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000114895   ⟹   ENSMUSP00000110545
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1874,416,161 - 74,493,057 (+)Ensembl
GRCm38.p6 Ensembl1874,283,090 - 74,359,986 (+)Ensembl
Ensembl Acc Id: ENSMUST00000176435   ⟹   ENSMUSP00000134908
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1874,416,193 - 74,493,055 (+)Ensembl
GRCm38.p6 Ensembl1874,283,122 - 74,359,984 (+)Ensembl
Ensembl Acc Id: ENSMUST00000176766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1874,428,029 - 74,433,278 (+)Ensembl
GRCm38.p6 Ensembl1874,294,958 - 74,300,207 (+)Ensembl
Ensembl Acc Id: ENSMUST00000177101   ⟹   ENSMUSP00000135452
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1874,416,233 - 74,433,265 (+)Ensembl
GRCm38.p6 Ensembl1874,283,162 - 74,300,194 (+)Ensembl
Ensembl Acc Id: ENSMUST00000177407
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1874,482,057 - 74,493,001 (+)Ensembl
GRCm38.p6 Ensembl1874,348,986 - 74,359,930 (+)Ensembl
RefSeq Acc Id: NM_028948   ⟹   NP_083224
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391874,416,171 - 74,493,055 (+)NCBI
GRCm381874,283,100 - 74,359,984 (+)NCBI
MGSCv371874,442,754 - 74,519,638 (+)RGD
Celera1875,512,454 - 75,592,877 (+)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_029424
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391874,416,171 - 74,493,055 (+)NCBI
GRCm381874,283,100 - 74,359,984 (+)NCBI
MGSCv371874,442,754 - 74,519,638 (+)RGD
Celera1875,512,454 - 75,592,877 (+)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011247012   ⟹   XP_011245314
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391874,427,891 - 74,492,911 (+)NCBI
GRCm381874,290,598 - 74,359,840 (+)NCBI
Sequence:
RefSeq Acc Id: NP_083224   ⟸   NM_028948
- UniProtKB: Q4KL15 (UniProtKB/Swiss-Prot),   Q9D439 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011245314   ⟸   XM_011247012
- Peptide Label: isoform X1
- UniProtKB: Q059Q0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000135452   ⟸   ENSMUST00000177101
Ensembl Acc Id: ENSMUSP00000110545   ⟸   ENSMUST00000114895
Ensembl Acc Id: ENSMUSP00000134908   ⟸   ENSMUST00000176435
Protein Domains
Trichohyalin-plectin-homology

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D439-F1-model_v2 AlphaFold Q9D439 1-514 view protein structure

Promoters
RGD ID:13678158
Promoter ID:EPDNEW_M23228
Type:initiation region
Name:Cfap53_1
Description:Mus musculus cilia and flagella associated protein 53 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381874,283,160 - 74,283,220EPDNEW
RGD ID:6829132
Promoter ID:MM_KWN:25683
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:NM_028948,   NR_029424
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361874,441,861 - 74,442,912 (+)MPROMDB
RGD ID:6829134
Promoter ID:MM_KWN:25684
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung,   MEF_B6
Transcripts:NM_028948_CCDC11,   UC008FPN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361874,443,271 - 74,444,322 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921703 AgrOrtholog
Ensembl Genes ENSMUSG00000035394 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000114895 ENTREZGENE
  ENSMUST00000114895.4 UniProtKB/Swiss-Prot
  ENSMUST00000176435 ENTREZGENE
InterPro CFAP53/TCHP UniProtKB/Swiss-Prot
  TPH_dom UniProtKB/Swiss-Prot
KEGG Report mmu:74453 UniProtKB/Swiss-Prot
MGD MGI:1921703 ENTREZGENE
NCBI Gene 74453 ENTREZGENE
PANTHER PTHR31183 UniProtKB/Swiss-Prot
  PTHR31183:SF1 UniProtKB/Swiss-Prot
Pfam TPH UniProtKB/Swiss-Prot
PhenoGen Cfap53 PhenoGen
UniProt CFA53_MOUSE UniProtKB/Swiss-Prot
  H3BJA5_MOUSE UniProtKB/TrEMBL
  Q059Q0 ENTREZGENE, UniProtKB/TrEMBL
  Q3TS07_MOUSE UniProtKB/TrEMBL
  Q4KL15 ENTREZGENE
  Q9D439 ENTREZGENE
UniProt Secondary Q4KL15 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-09-30 Cfap53  cilia and flagella associated protein 53  Ccdc11  coiled-coil domain containing 11  Symbol and/or name change 5135510 APPROVED