BC049715 (cDNA sequence BC049715) - Rat Genome Database

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Gene: BC049715 (cDNA sequence BC049715) Mus musculus
Analyze
Symbol: BC049715
Name: cDNA sequence BC049715
RGD ID: 1621240
MGI Page MGI
Description: Orthologous to human C12orf60 (chromosome 12 open reading frame 60).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC320135; uncharacterized protein C12orf60 homolog
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396136,805,158 - 136,818,918 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6136,804,624 - 136,817,660 (+)EnsemblGRCm39 Ensembl
GRCm386136,828,160 - 136,841,920 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6136,827,626 - 136,840,662 (+)EnsemblGRCm38mm10GRCm38
MGSCv376136,777,364 - 136,789,075 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366136,792,637 - 136,804,858 (+)NCBIMGSCv36mm8
Celera6139,838,338 - 139,873,089 (+)NCBICelera
Cytogenetic Map6G1NCBI
cM Map666.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:27626380  
PMID:38355793  


Genomics

Comparative Map Data
BC049715
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396136,805,158 - 136,818,918 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6136,804,624 - 136,817,660 (+)EnsemblGRCm39 Ensembl
GRCm386136,828,160 - 136,841,920 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6136,827,626 - 136,840,662 (+)EnsemblGRCm38mm10GRCm38
MGSCv376136,777,364 - 136,789,075 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366136,792,637 - 136,804,858 (+)NCBIMGSCv36mm8
Celera6139,838,338 - 139,873,089 (+)NCBICelera
Cytogenetic Map6G1NCBI
cM Map666.72NCBI
C12orf60
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381214,803,670 - 14,824,415 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1214,803,666 - 14,906,586 (+)EnsemblGRCh38hg38GRCh38
GRCh371214,956,604 - 14,977,349 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361214,847,773 - 14,868,059 (+)NCBINCBI36Build 36hg18NCBI36
Celera1220,101,493 - 20,121,778 (+)NCBICelera
Cytogenetic Map12p12.3NCBI
HuRef1214,725,963 - 14,746,251 (+)NCBIHuRef
CHM1_11214,922,599 - 14,942,885 (+)NCBICHM1_1
T2T-CHM13v2.01214,680,940 - 14,701,780 (+)NCBIT2T-CHM13v2.0
C4h12orf60
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84171,450,603 - 171,462,735 (+)NCBIGRCr8
mRatBN7.24169,716,821 - 169,731,532 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4169,716,030 - 169,734,237 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4176,014,134 - 176,026,233 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04171,795,867 - 171,807,999 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04170,419,797 - 170,431,896 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04170,807,633 - 170,822,514 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,820,594 - 170,821,995 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04235,067,929 - 235,079,384 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44173,862,352 - 173,874,481 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4158,302,929 - 158,315,061 (+)NCBICelera
Cytogenetic Map4q43NCBI
C10H12orf60
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21020,274,332 - 20,275,298 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,270,604 - 20,271,990 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01214,828,266 - 14,830,706 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11215,225,226 - 15,227,584 (+)NCBIpanpan1.1PanPan1.1panPan2
C27H12orf60
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12731,774,850 - 31,805,601 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2731,792,007 - 31,792,875 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2714,643,151 - 14,657,088 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02732,098,407 - 32,112,354 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2732,097,434 - 32,103,970 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12731,970,874 - 32,002,078 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02731,946,479 - 31,960,407 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02714,375,054 - 14,406,334 (+)NCBIUU_Cfam_GSD_1.0
CUNH12orf60
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494592,923,566 - 92,945,348 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365872,650,860 - 2,651,996 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C5H12orf60
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl557,734,665 - 57,735,396 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1557,734,455 - 57,735,612 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2561,123,758 - 61,139,304 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH12orf60
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11114,704,531 - 14,724,074 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1114,723,155 - 14,723,889 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606920,586,179 - 20,587,408 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH12orf60
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475223,198,069 - 23,198,797 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:136
Count of miRNA genes:64
Interacting mature miRNAs:66
Transcripts:ENSMUST00000052702, ENSMUST00000163640
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
10449437Pas15_mpulmonary adenoma susceptibility 15 (mouse)6128180868149588044Mouse
10449436Pas17_mpulmonary adenoma susceptibility 17 (mouse)6124334273145601739Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
1301084Bpq5_mblood pressure QTL 5 (mouse)Not determined6129330484149588044Mouse
14746990Manh61_mmandible shape 61 (mouse)6130156355149588044Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
10766452Sle23_msystematic lupus erythematosus susceptibility 23 (mouse)6128601582149588044Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
14746999Mancz6_mmandible centroid size 6 (mouse)6130156355149588044Mouse
1302089Wta2_mweight adult 2 (mouse)Not determined6125269523149588044Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1301686Trmq1_mT cell ratio modifier QTL 1 (mouse)Not determined6129330484149588044Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
1301620Insq8_minsulin QTL 8 (mouse)Not determined6129534979149588044Mouse
12879916Shm5_msperm head morphology 5 (mouse)6132266532145601739Mouse
10053680Lith25_mlithogenic gene 25 (mouse)Not determined6128601582149588044Mouse
10412215Cmv3_mcytomegalovirus resistance 3 (mouse)Not determined6128811857137416927Mouse
4141974Skmw14_mskeletal muscle weight 14 (mouse)Not determined6129330484149588044Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1301820Mop1_mmorphine preference 1 (mouse)Not determined6132578005146330736Mouse
1301027Hdlq12_mHDL QTL 12 (mouse)Not determined6128601582149588044Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
1558959Eamcd2_mexperimental autoimmune myocarditis 2 (mouse)Not determined6129953954149588044Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse

Markers in Region
UniSTS:489545  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386136,804,068 - 136,804,379UniSTSGRCm38
MGSCv376136,752,589 - 136,752,900UniSTSGRCm37
Celera6139,852,914 - 139,853,225UniSTS
Celera6139,813,340 - 139,813,651UniSTS
Cytogenetic Map6G1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_178776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX638225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000052702   ⟹   ENSMUSP00000049512
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6136,805,841 - 136,817,534 (+)Ensembl
GRCm38.p6 Ensembl6136,828,843 - 136,840,536 (+)Ensembl
Ensembl Acc Id: ENSMUST00000163640   ⟹   ENSMUSP00000133266
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6136,816,762 - 136,817,505 (+)Ensembl
GRCm38.p6 Ensembl6136,839,764 - 136,840,507 (+)Ensembl
Ensembl Acc Id: ENSMUST00000203499   ⟹   ENSMUSP00000145015
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6136,807,901 - 136,817,660 (+)Ensembl
GRCm38.p6 Ensembl6136,830,903 - 136,840,662 (+)Ensembl
Ensembl Acc Id: ENSMUST00000204086   ⟹   ENSMUSP00000145317
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6136,804,983 - 136,816,796 (+)Ensembl
GRCm38.p6 Ensembl6136,827,985 - 136,839,798 (+)Ensembl
Ensembl Acc Id: ENSMUST00000205058
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6136,804,624 - 136,810,162 (+)Ensembl
GRCm38.p6 Ensembl6136,827,626 - 136,833,164 (+)Ensembl
RefSeq Acc Id: NM_178776   ⟹   NP_848891
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396136,805,841 - 136,817,552 (+)NCBI
GRCm386136,828,843 - 136,840,554 (+)NCBI
MGSCv376136,777,364 - 136,789,075 (+)RGD
Celera6139,838,338 - 139,873,089 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506262   ⟹   XP_006506325
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396136,805,158 - 136,818,918 (+)NCBI
GRCm386136,828,160 - 136,841,920 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506263   ⟹   XP_006506326
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396136,805,188 - 136,818,918 (+)NCBI
GRCm386136,828,190 - 136,841,920 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506264   ⟹   XP_006506327
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396136,805,183 - 136,818,918 (+)NCBI
GRCm386136,828,185 - 136,841,920 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506265   ⟹   XP_006506328
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396136,805,161 - 136,818,918 (+)NCBI
GRCm386136,828,163 - 136,841,920 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506266   ⟹   XP_006506329
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396136,808,880 - 136,818,918 (+)NCBI
GRCm386136,831,881 - 136,841,920 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321634   ⟹   XP_017177123
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396136,805,158 - 136,818,918 (+)NCBI
GRCm386136,828,160 - 136,841,920 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321635   ⟹   XP_017177124
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396136,805,183 - 136,818,918 (+)NCBI
GRCm386136,828,185 - 136,841,920 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321636   ⟹   XP_017177125
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396136,805,181 - 136,818,918 (+)NCBI
GRCm386136,828,183 - 136,841,920 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255455   ⟹   XP_030111315
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396136,806,223 - 136,818,918 (+)NCBI
GRCm386136,829,938 - 136,841,920 (+)NCBI
Sequence:
RefSeq Acc Id: NP_848891   ⟸   NM_178776
- UniProtKB: Q8C8R6 (UniProtKB/Swiss-Prot),   Q810N5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506327   ⟸   XM_006506264
- Peptide Label: isoform X1
- UniProtKB: Q8C8R6 (UniProtKB/Swiss-Prot),   Q810N5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506325   ⟸   XM_006506262
- Peptide Label: isoform X1
- UniProtKB: Q8C8R6 (UniProtKB/Swiss-Prot),   Q810N5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506326   ⟸   XM_006506263
- Peptide Label: isoform X1
- UniProtKB: Q8C8R6 (UniProtKB/Swiss-Prot),   Q810N5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506328   ⟸   XM_006506265
- Peptide Label: isoform X1
- UniProtKB: Q8C8R6 (UniProtKB/Swiss-Prot),   Q810N5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506329   ⟸   XM_006506266
- Peptide Label: isoform X1
- UniProtKB: Q8C8R6 (UniProtKB/Swiss-Prot),   Q810N5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017177124   ⟸   XM_017321635
- Peptide Label: isoform X1
- UniProtKB: Q8C8R6 (UniProtKB/Swiss-Prot),   Q810N5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017177123   ⟸   XM_017321634
- Peptide Label: isoform X1
- UniProtKB: Q8C8R6 (UniProtKB/Swiss-Prot),   Q810N5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017177125   ⟸   XM_017321636
- Peptide Label: isoform X1
- UniProtKB: Q8C8R6 (UniProtKB/Swiss-Prot),   Q810N5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030111315   ⟸   XM_030255455
- Peptide Label: isoform X1
- UniProtKB: Q810N5 (UniProtKB/Swiss-Prot),   Q8C8R6 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000145317   ⟸   ENSMUST00000204086
Ensembl Acc Id: ENSMUSP00000049512   ⟸   ENSMUST00000052702
Ensembl Acc Id: ENSMUSP00000145015   ⟸   ENSMUST00000203499
Ensembl Acc Id: ENSMUSP00000133266   ⟸   ENSMUST00000163640

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q810N5-F1-model_v2 AlphaFold Q810N5 1-247 view protein structure

Promoters
RGD ID:6838874
Promoter ID:MM_KWN:48040
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_178776,   UC009EMH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366136,775,226 - 136,777,047 (+)MPROMDB
RGD ID:6891350
Promoter ID:EPDNEW_M9126
Type:initiation region
Name:BC049715_2
Description:Mus musculus cDNA sequence BC049715 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9127  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386136,828,815 - 136,828,875EPDNEW
RGD ID:6891352
Promoter ID:EPDNEW_M9127
Type:multiple initiation site
Name:BC049715_1
Description:Mus musculus cDNA sequence BC049715 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9126  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386136,831,916 - 136,831,976EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3605234 AgrOrtholog
Ensembl Genes ENSMUSG00000047515 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000052702 ENTREZGENE
  ENSMUST00000052702.7 UniProtKB/Swiss-Prot
  ENSMUST00000163640.2 UniProtKB/Swiss-Prot
  ENSMUST00000203499 ENTREZGENE
  ENSMUST00000203499.2 UniProtKB/Swiss-Prot
  ENSMUST00000204086.2 UniProtKB/TrEMBL
InterPro DUF4533 UniProtKB/Swiss-Prot
KEGG Report mmu:320135 UniProtKB/Swiss-Prot
MGD MGI:3605234 ENTREZGENE
NCBI Gene 320135 ENTREZGENE
PANTHER CHROMOSOME 12 OPEN READING FRAME 60 UniProtKB/Swiss-Prot
  CHROMOSOME 12 OPEN READING FRAME 60 UniProtKB/Swiss-Prot
Pfam DUF4533 UniProtKB/Swiss-Prot
PhenoGen BC049715 PhenoGen
UniProt A0A0N4SW00_MOUSE UniProtKB/TrEMBL
  CL060_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8C8R6 ENTREZGENE
UniProt Secondary Q8C8R6 UniProtKB/Swiss-Prot