Myo1d (myosin ID) - Rat Genome Database

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Gene: Myo1d (myosin ID) Mus musculus
Analyze
Symbol: Myo1d
Name: myosin ID
RGD ID: 1621206
MGI Page MGI
Description: Predicted to enable several functions, including actin filament binding activity; calcium-dependent protein binding activity; and calmodulin binding activity. Predicted to be involved in several processes, including actin filament organization; actin filament-based movement; and early endosome to recycling endosome transport. Located in several cellular components, including brush border; myelin sheath; and neuronal cell body. Is expressed in alimentary system; foot; and sensory organ. Orthologous to human MYO1D (myosin ID).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9930104H07Rik; AW544947; D11Ertd9; D11Ertd9e; MGC183676; myosin-1d; myosin-Id; unconventional myosin-Id
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,372,945 - 80,670,881 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,372,952 - 80,670,851 (-)EnsemblGRCm39 Ensembl
GRCm381180,482,126 - 80,780,055 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,482,126 - 80,780,025 (-)EnsemblGRCm38mm10GRCm38
MGSCv371180,295,629 - 80,593,527 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361180,400,022 - 80,596,220 (-)NCBIMGSCv36mm8
Celera1190,120,134 - 90,418,853 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1147.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-butoxyethanol  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (EXP)
3-Nitrobenzanthrone  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
chlordecone  (EXP)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
Cuprizon  (ISO)
cycloheximide  (ISO)
dexamethasone  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethanol  (EXP)
flavonoids  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
genistein  (EXP)
gentamycin  (ISO)
glafenine  (ISO)
glycidol  (ISO)
indometacin  (ISO)
inulin  (EXP)
L-ethionine  (ISO)
mercury dibromide  (ISO)
methyl methanesulfonate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosomorpholine  (ISO)
nefazodone  (ISO)
nimesulide  (ISO)
omeprazole  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
profenofos  (ISO)
propiconazole  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
sulforaphane  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
triadimefon  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
tunicamycin  (EXP,ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8884266   PMID:10349636   PMID:10722873   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12076089   PMID:12466851   PMID:12477932   PMID:12486594  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:16465594   PMID:17634366   PMID:20089841   PMID:21267068   PMID:21330445   PMID:21677750   PMID:21873635   PMID:22114352   PMID:22284616  
PMID:23341629   PMID:24457600   PMID:28378742   PMID:28634551   PMID:29559226   PMID:30196744   PMID:30279225   PMID:30335684   PMID:30409884   PMID:32325033   PMID:33230847   PMID:34459138  
PMID:37142655   PMID:37315734   PMID:38355793  


Genomics

Comparative Map Data
Myo1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,372,945 - 80,670,881 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,372,952 - 80,670,851 (-)EnsemblGRCm39 Ensembl
GRCm381180,482,126 - 80,780,055 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,482,126 - 80,780,025 (-)EnsemblGRCm38mm10GRCm38
MGSCv371180,295,629 - 80,593,527 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361180,400,022 - 80,596,220 (-)NCBIMGSCv36mm8
Celera1190,120,134 - 90,418,853 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1147.95NCBI
MYO1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381732,492,522 - 32,877,124 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1732,492,522 - 32,877,177 (-)EnsemblGRCh38hg38GRCh38
GRCh371730,819,540 - 31,204,142 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361727,843,741 - 28,228,015 (-)NCBINCBI36Build 36hg18NCBI36
Build 341727,843,740 - 28,228,015NCBI
Celera1727,729,830 - 28,114,502 (-)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1727,005,843 - 27,390,754 (-)NCBIHuRef
CHM1_11730,882,090 - 31,266,671 (-)NCBICHM1_1
T2T-CHM13v2.01733,438,289 - 33,823,203 (-)NCBIT2T-CHM13v2.0
Myo1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81065,986,900 - 66,263,538 (-)NCBIGRCr8
mRatBN7.21065,489,153 - 65,765,812 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1065,489,154 - 65,766,349 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1070,117,073 - 70,393,698 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01069,622,393 - 69,899,014 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01065,084,076 - 65,360,306 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01067,866,939 - 68,142,864 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1067,866,940 - 68,142,864 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01067,520,649 - 67,811,744 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41068,720,729 - 68,997,721 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1064,447,472 - 64,723,456 (-)NCBICelera
Cytogenetic Map10q26NCBI
Myo1d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554817,413,211 - 7,752,198 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554817,413,211 - 7,752,198 (-)NCBIChiLan1.0ChiLan1.0
MYO1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21931,581,486 - 31,964,509 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11733,462,675 - 33,845,563 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01723,900,814 - 24,283,721 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11724,287,194 - 24,574,209 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1724,284,959 - 24,572,183 (+)Ensemblpanpan1.1panPan2
MYO1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1940,171,426 - 40,497,556 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl940,171,158 - 40,496,210 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha939,330,493 - 39,656,452 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0940,987,302 - 41,313,614 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl940,986,996 - 41,313,603 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1939,773,164 - 40,099,782 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0940,067,715 - 40,393,998 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0940,142,489 - 40,468,690 (+)NCBIUU_Cfam_GSD_1.0
Myo1d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560239,224,247 - 39,531,010 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365382,102,186 - 2,408,954 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365382,102,192 - 2,408,953 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYO1D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1242,120,368 - 42,489,194 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11242,120,373 - 42,489,191 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21243,931,996 - 44,248,454 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MYO1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11626,050,272 - 26,425,568 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1626,049,861 - 26,425,455 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660753,614,758 - 3,993,139 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myo1d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624875543,260 - 877,953 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624875544,065 - 877,958 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Myo1d
8189 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1109
Count of miRNA genes:567
Interacting mature miRNAs:669
Transcripts:ENSMUST00000041065, ENSMUST00000070997, ENSMUST00000125944
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
4141365Ltxs3_mlethal factor toxin susceptibility 3 (mouse)Not determined117757387380746358Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117220979684731462Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117373754182069425Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse

Markers in Region
C86807  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,768,130 - 80,768,329UniSTSGRCm38
MGSCv371180,581,632 - 80,581,831UniSTSGRCm37
Celera1190,407,231 - 90,407,430UniSTS
Cytogenetic Map11B5UniSTS
cM Map1146.0UniSTS
Whitehead/MRC_RH111028.48UniSTS
AU015555  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,643,088 - 80,643,300UniSTSGRCm38
MGSCv371180,456,590 - 80,456,802UniSTSGRCm37
Celera1190,281,360 - 90,281,572UniSTS
Cytogenetic Map11B5UniSTS
cM Map1146.0UniSTS
Whitehead/MRC_RH111035.22UniSTS
AW544947  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,482,456 - 80,482,583UniSTSGRCm38
MGSCv371180,295,958 - 80,296,085UniSTSGRCm37
Celera1190,120,463 - 90,120,590UniSTS
Cytogenetic Map11B5UniSTS
cM Map1146.0UniSTS
Whitehead/MRC_RH111024.97UniSTS
D11Mit118  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,574,588 - 80,574,758UniSTSGRCm38
MGSCv371180,388,090 - 80,388,260UniSTSGRCm37
Celera1190,212,795 - 90,212,965UniSTS
Cytogenetic Map11B5UniSTS
cM Map1146.43UniSTS
Whitehead Genetic1142.6UniSTS
Whitehead_YAC11 UniSTS
RH125954  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,482,160 - 80,482,365UniSTSGRCm38
MGSCv371180,295,662 - 80,295,867UniSTSGRCm37
Celera1190,120,167 - 90,120,372UniSTS
Cytogenetic Map11B5UniSTS
cM Map1146.0UniSTS
cM Map1145.0UniSTS
Whitehead/MRC_RH111026.8UniSTS
D11Bhm122  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,509,021 - 80,509,124UniSTSGRCm38
MGSCv371180,322,523 - 80,322,626UniSTSGRCm37
Celera1190,147,028 - 90,147,131UniSTS
Cytogenetic Map11B5UniSTS
cM Map1146.42UniSTS
D11Bhm124  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,747,245 - 80,747,438UniSTSGRCm38
MGSCv371180,560,747 - 80,560,940UniSTSGRCm37
Celera1190,385,888 - 90,386,081UniSTS
Cytogenetic Map11B5UniSTS
cM Map1146.46UniSTS
D11Bhm123  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,659,301 - 80,659,490UniSTSGRCm38
MGSCv371180,472,803 - 80,472,992UniSTSGRCm37
Celera1190,297,573 - 90,297,762UniSTS
Cytogenetic Map11B5UniSTS
cM Map1146.44UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_177390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF426464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL663054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X81597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000041065   ⟹   ENSMUSP00000037819
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,372,952 - 80,670,851 (-)Ensembl
GRCm38.p6 Ensembl1180,482,126 - 80,780,025 (-)Ensembl
Ensembl Acc Id: ENSMUST00000070997   ⟹   ENSMUSP00000066948
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,474,653 - 80,670,851 (-)Ensembl
GRCm38.p6 Ensembl1180,583,827 - 80,780,025 (-)Ensembl
Ensembl Acc Id: ENSMUST00000125944
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,564,493 - 80,670,829 (-)Ensembl
GRCm38.p6 Ensembl1180,673,667 - 80,780,003 (-)Ensembl
RefSeq Acc Id: NM_177390   ⟹   NP_796364
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,372,953 - 80,670,851 (-)NCBI
GRCm381180,482,127 - 80,780,025 (-)NCBI
MGSCv371180,295,629 - 80,593,527 (-)RGD
Celera1190,120,134 - 90,418,853 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533585   ⟹   XP_006533648
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,474,605 - 80,670,880 (-)NCBI
GRCm381180,583,832 - 80,780,055 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011249085   ⟹   XP_011247387
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,372,945 - 80,554,265 (-)NCBI
GRCm381180,482,126 - 80,663,447 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156783   ⟹   XP_036012676
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,372,945 - 80,655,447 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156784   ⟹   XP_036012677
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,474,605 - 80,655,447 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156785   ⟹   XP_036012678
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,554,249 - 80,655,447 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003949464
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,484,583 - 80,670,881 (-)NCBI
GRCm381180,637,874 - 80,780,055 (-)NCBI
Sequence:
RefSeq Acc Id: NP_796364   ⟸   NM_177390
- UniProtKB: Q8BWY5 (UniProtKB/Swiss-Prot),   Q5SYD0 (UniProtKB/Swiss-Prot),   Q5SSK7 (UniProtKB/Swiss-Prot),   B2RWZ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533648   ⟸   XM_006533585
- Peptide Label: isoform X3
- UniProtKB: B2RWZ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011247387   ⟸   XM_011249085
- Peptide Label: isoform X5
- UniProtKB: Q3UG58 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000066948   ⟸   ENSMUST00000070997
Ensembl Acc Id: ENSMUSP00000037819   ⟸   ENSMUST00000041065
RefSeq Acc Id: XP_036012676   ⟸   XM_036156783
- Peptide Label: isoform X1
- UniProtKB: B2RWZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012677   ⟸   XM_036156784
- Peptide Label: isoform X2
- UniProtKB: B2RWZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012678   ⟸   XM_036156785
- Peptide Label: isoform X4
Protein Domains
IQ   Myosin motor   TH1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5SYD0-F1-model_v2 AlphaFold Q5SYD0 1-1006 view protein structure

Promoters
RGD ID:6821386
Promoter ID:MM_KWN:8818
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4
Transcripts:OTTMUST00000000637,   OTTMUST00000000638,   UC007KMI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361180,593,151 - 80,593,651 (-)MPROMDB
RGD ID:8675806
Promoter ID:EPDNEW_M15934
Type:initiation region
Name:Myo1d_1
Description:Mus musculus myosin ID , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381180,779,977 - 80,780,037EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107728 AgrOrtholog
Ensembl Genes ENSMUSG00000035441 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000041065 ENTREZGENE
  ENSMUST00000041065.14 UniProtKB/Swiss-Prot
  ENSMUST00000070997 ENTREZGENE
  ENSMUST00000070997.6 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.4820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.58.530 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myosin VI head, motor domain, U50 subdomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro IQ_motif_EF-hand-BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myosin_head_motor_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myosin_TH1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MYSc_Myo1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:338367 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:107728 ENTREZGENE
NCBI Gene Myo1d ENTREZGENE
PANTHER MYOSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UNCONVENTIONAL MYOSIN-ID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Myosin_head UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myosin_TH1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00612 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Myo1d PhenoGen
PRINTS MYOSINHEAVY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE MYOSIN_MOTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50096 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TH1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART MYSc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00015 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RWZ2 ENTREZGENE, UniProtKB/TrEMBL
  MYO1D_MOUSE UniProtKB/Swiss-Prot
  Q3UG58 ENTREZGENE, UniProtKB/TrEMBL
  Q5SSK7 ENTREZGENE
  Q5SYD0 ENTREZGENE
  Q8BWY5 ENTREZGENE
  Q8K063_MOUSE UniProtKB/TrEMBL
  Q91ZI5_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q5SSK7 UniProtKB/Swiss-Prot
  Q8BWY5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Myo1d  myosin ID  Myo1d  myosin Id  Symbol and/or name change 5135510 APPROVED
2024-08-21 Myo1d  myosin Id  Myo1d  myosin ID  Symbol and/or name change 5135510 APPROVED