C9orf72 (C9orf72, member of C9orf72-SMCR8 complex) - Rat Genome Database

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Gene: C9orf72 (C9orf72, member of C9orf72-SMCR8 complex) Mus musculus
Analyze
Symbol: C9orf72
Name: C9orf72, member of C9orf72-SMCR8 complex
RGD ID: 1620759
MGI Page MGI
Description: Enables small GTPase binding activity. Involved in several processes, including axon extension; late endosome to lysosome transport; and regulation of synaptic vesicle cycle. Located in several cellular components, including extracellular space; perikaryon; and presynapse. Is active in glutamatergic synapse; hippocampal mossy fiber to CA3 synapse; and postsynapse. Is expressed in several structures, including adipose tissue; alimentary system; genitourinary system; nervous system; and sensory organ. Used to study autoimmune disease. Human ortholog(s) of this gene implicated in frontotemporal dementia and/or amyotrophic lateral sclerosis 1. Orthologous to human C9orf72 (C9orf72-SMCR8 complex subunit).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3110043O21Rik; AI840585; Denn; Dennd9; guanine nucleotide exchange C9orf72 homolog; guanine nucleotide exchange factor C9orf72 homolog; hypothetical protein LOC73205; protein C9orf72 homolog; RIKEN cDNA 3110043O21 gene; RP23-307M2.1; uncharacterized protein C9orf72 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39435,191,285 - 35,226,153 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl435,191,285 - 35,226,175 (-)EnsemblGRCm39 Ensembl
GRCm38435,191,285 - 35,226,153 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl435,191,285 - 35,226,175 (-)EnsemblGRCm38mm10GRCm38
MGSCv37435,138,531 - 35,173,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36435,380,169 - 35,415,010 (-)NCBIMGSCv36mm8
Celera434,907,703 - 34,942,307 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map417.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal celiac lymph node morphology  (IAGP)
abnormal cervical lymph node morphology  (IAGP)
abnormal circulating cytokine level  (IAGP)
abnormal circulating interleukin level  (IAGP)
abnormal lymph node cell ratio  (IAGP)
abnormal lymphocyte morphology  (IAGP)
abnormal macrophage physiology  (IEA)
abnormal microglial cell physiology  (IEA)
abnormal social investigation  (IAGP)
abnormal spinal cord grey matter morphology  (IEA)
abnormal spinal cord white matter morphology  (IEA)
abnormal spleen morphology  (IAGP)
abnormal vertebral arch morphology  (IEA)
ataxia  (IAGP)
brain inflammation  (IAGP)
cachexia  (IAGP)
decreased body weight  (IAGP)
decreased circulating interleukin-2 level  (IAGP)
decreased erythrocyte cell number  (IAGP)
decreased hematocrit  (IAGP)
decreased hemoglobin content  (IAGP)
decreased lymphocyte cell number  (IAGP)
decreased mean corpuscular volume  (IAGP)
decreased total body fat amount  (IEA)
dermatitis  (IAGP)
enlarged cervical lymph nodes  (IAGP)
enlarged liver  (IAGP)
enlarged lymph nodes  (IEA)
enlarged spleen  (IAGP)
impaired coordination  (IAGP)
increased anti-double stranded DNA antibody level  (IAGP)
increased autoantibody level  (IAGP)
increased CD4-positive, CD25-positive, alpha-beta regulatory T cell number  (IAGP)
increased circulating alkaline phosphatase level  (IEA)
increased IgG level  (IAGP)
increased IgM level  (IAGP)
increased lean body mass  (IEA)
increased leukocyte cell number  (IAGP)
increased neutrophil cell number  (IAGP)
increased spleen weight  (IEA)
increased splenocyte number  (IAGP)
increased susceptibility to autoimmune disorder  (IAGP)
internal hemorrhage  (IAGP)
liver inflammation  (IAGP)
lysosomal protein accumulation  (IEA)
microcytic anemia  (IAGP)
premature death  (IAGP)
respiratory failure  (IAGP)
small testis  (IEA)
thrombocytopenia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:21267068  
PMID:21873635   PMID:23979585   PMID:24170860   PMID:24185425   PMID:24194600   PMID:24549040   PMID:25977373   PMID:26044557   PMID:26408000   PMID:26989253   PMID:26998601   PMID:27103069  
PMID:27112497   PMID:27112499   PMID:27193190   PMID:27412785   PMID:27476503   PMID:27617292   PMID:27626380   PMID:27723745   PMID:27875531   PMID:28319438   PMID:28606110   PMID:28720882  
PMID:29400714   PMID:29950492   PMID:30022074   PMID:30366907   PMID:30669939   PMID:30696333   PMID:30945056   PMID:31086314   PMID:31582731   PMID:31612854   PMID:31625563   PMID:31651360  
PMID:31658762   PMID:31847700   PMID:32086375   PMID:32175624   PMID:32375043   PMID:32483373   PMID:32620797   PMID:32690681   PMID:32814898   PMID:32887666   PMID:33022226   PMID:33022228  
PMID:33482083   PMID:33545050   PMID:33775797   PMID:34133945   PMID:34783984   PMID:34942529   PMID:35793625   PMID:35843530   PMID:35876881   PMID:36220889   PMID:36322143   PMID:36800288  
PMID:37250330   PMID:37353944   PMID:37527465   PMID:37590144   PMID:38064514   PMID:38295187   PMID:38499658   PMID:38684907   PMID:38942112  


Genomics

Comparative Map Data
C9orf72
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39435,191,285 - 35,226,153 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl435,191,285 - 35,226,175 (-)EnsemblGRCm39 Ensembl
GRCm38435,191,285 - 35,226,153 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl435,191,285 - 35,226,175 (-)EnsemblGRCm38mm10GRCm38
MGSCv37435,138,531 - 35,173,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36435,380,169 - 35,415,010 (-)NCBIMGSCv36mm8
Celera434,907,703 - 34,942,307 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map417.13NCBI
C9orf72
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38927,546,546 - 27,573,866 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl927,535,640 - 27,573,866 (-)EnsemblGRCh38hg38GRCh38
GRCh37927,546,544 - 27,573,864 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36927,536,544 - 27,563,842 (-)NCBINCBI36Build 36hg18NCBI36
Celera927,474,665 - 27,501,967 (-)NCBICelera
Cytogenetic Map9p21.2NCBI
HuRef927,499,333 - 27,526,665 (-)NCBIHuRef
CHM1_1927,546,336 - 27,573,669 (-)NCBICHM1_1
T2T-CHM13v2.0927,557,112 - 27,584,475 (-)NCBIT2T-CHM13v2.0
RGD1359108
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8554,562,570 - 54,587,649 (-)NCBIGRCr8
mRatBN7.2549,766,340 - 49,791,434 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl549,766,325 - 49,791,408 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx551,959,515 - 51,984,642 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0553,559,771 - 53,584,898 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0553,461,625 - 53,486,752 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0550,666,444 - 50,691,523 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl550,668,040 - 50,684,409 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0555,229,460 - 55,254,965 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4551,839,724 - 51,865,205 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1551,839,902 - 51,865,384 (-)NCBI
Celera548,510,000 - 48,535,299 (-)NCBICelera
Cytogenetic Map5q21NCBI
C9orf72
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554727,310,788 - 7,337,735 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554727,299,092 - 7,337,591 (+)NCBIChiLan1.0ChiLan1.0
C9orf72
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21196,969,169 - 96,996,389 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1996,975,114 - 97,013,601 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0927,395,054 - 27,422,282 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1928,001,498 - 28,026,192 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl928,001,813 - 28,022,066 (-)Ensemblpanpan1.1panPan2
C9orf72
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11145,664,942 - 45,688,777 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1145,666,293 - 45,688,780 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1144,341,334 - 44,365,451 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01146,611,075 - 46,635,216 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1146,611,079 - 46,634,080 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11145,266,465 - 45,290,597 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01145,163,231 - 45,187,545 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01145,903,891 - 45,927,956 (-)NCBIUU_Cfam_GSD_1.0
C9orf72
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947160,566,757 - 160,593,838 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366112,078,716 - 2,101,881 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366112,074,655 - 2,101,846 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C9orf72
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1038,389,331 - 38,415,901 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11038,389,366 - 38,415,903 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21043,532,175 - 43,558,682 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C9orf72
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473631,751,268 - 31,788,253 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473631,737,606 - 31,787,900 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C9orf72
1087 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2011
Count of miRNA genes:606
Interacting mature miRNAs:726
Transcripts:ENSMUST00000084724, ENSMUST00000108126, ENSMUST00000108127, ENSMUST00000130538, ENSMUST00000142628, ENSMUST00000149138, ENSMUST00000156472
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
10401115Pgia35_mproteoglycan induced arthritis 35 (mouse)Not determined41256237746562509Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1558992Ses8_msalmonella enteritidis susceptibility 8 (mouse)Not determined4868324042683429Mouse
4141302Ssrq5_mstress response QTL 5 (mouse)Not determined868324042683430Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
12880405Jcdq1_mjoint cartilage degeneration QTL 1 (mouse)41256237746562509Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
1301697Sluc18_msusceptibility to lung cancer 18 (mouse)Not determined42237344856373612Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
25440481Moaq1_mmodifier of alien QTL 1 (mouse)41950000046000000Mouse
1301237Alcp7_malcohol preference locus 7 (mouse)Not determined41739516051395290Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
1302075Bdln6_mbody length 6 (mouse)Not determined42237344856373612Mouse
1302010Wta1_mweight adult 1 (mouse)Not determined4868324042683429Mouse
4142290Ssrq9_mstress response QTL 9 (mouse)Not determined3439516046332776Mouse
1301437Scon1_msucrose consumption 1 (mouse)Not determined42237344856373612Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse
1301473Triglq1_mtriglyceride QTL 1 (mouse)Not determined4868324042683429Mouse
1300769Pcyts2_mplasmacytoma susceptibility 2 (mouse)Not determined42211194456112145Mouse
1301990Arvm1_mautoimmune renal vasculitis 1 (mouse)Not determined42933264663332776Mouse
1302058Hrtfm3_mheart failure modifier 3 (mouse)Not determined42211194456112145Mouse
1302184Aaom1_mautoimmune aoritis in MRL mice 1 (mouse)Not determined42432229946332776Mouse
1302125Lxw1_mlupus BXSB x NZW 1 (mouse)Not determined4868324042683429Mouse

Markers in Region
AI840585  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38435,191,535 - 35,191,629UniSTSGRCm38
MGSCv37435,138,784 - 35,138,878UniSTSGRCm37
Celera434,907,956 - 34,908,050UniSTS
Cytogenetic Map4A5UniSTS
Whitehead/MRC_RH4599.88UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000084724   ⟹   ENSMUSP00000081775
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl435,191,285 - 35,226,123 (-)Ensembl
GRCm38.p6 Ensembl435,191,285 - 35,226,123 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108126   ⟹   ENSMUSP00000103761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl435,191,287 - 35,225,834 (-)Ensembl
GRCm38.p6 Ensembl435,191,287 - 35,225,834 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108127   ⟹   ENSMUSP00000103762
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl435,191,287 - 35,225,880 (-)Ensembl
GRCm38.p6 Ensembl435,191,287 - 35,225,880 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130538
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl435,218,409 - 35,226,123 (-)Ensembl
GRCm38.p6 Ensembl435,218,409 - 35,226,123 (-)Ensembl
Ensembl Acc Id: ENSMUST00000142628
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl435,197,044 - 35,206,130 (-)Ensembl
GRCm38.p6 Ensembl435,197,044 - 35,206,130 (-)Ensembl
Ensembl Acc Id: ENSMUST00000149138
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl435,218,593 - 35,226,123 (-)Ensembl
GRCm38.p6 Ensembl435,218,593 - 35,226,123 (-)Ensembl
Ensembl Acc Id: ENSMUST00000156472
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl435,212,423 - 35,226,175 (-)Ensembl
GRCm38.p6 Ensembl435,212,423 - 35,226,175 (-)Ensembl
RefSeq Acc Id: NM_001081343   ⟹   NP_001074812
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39435,191,285 - 35,225,836 (-)NCBI
GRCm38435,191,285 - 35,225,836 (-)NCBI
MGSCv37435,138,531 - 35,173,129 (-)RGD
Celera434,907,703 - 34,942,307 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_028466   ⟹   NP_082742
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39435,191,285 - 35,225,836 (-)NCBI
GRCm38435,191,285 - 35,225,836 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006538292   ⟹   XP_006538355
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39435,191,285 - 35,226,153 (-)NCBI
GRCm38435,191,285 - 35,226,153 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006538293   ⟹   XP_006538356
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39435,191,285 - 35,226,131 (-)NCBI
GRCm38435,191,285 - 35,226,118 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001074812   ⟸   NM_001081343
- Peptide Label: isoform 1
- UniProtKB: Q3TJP2 (UniProtKB/Swiss-Prot),   A6PWW3 (UniProtKB/Swiss-Prot),   Q3U3D8 (UniProtKB/Swiss-Prot),   Q6DFW0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006538355   ⟸   XM_006538292
- Peptide Label: isoform X1
- UniProtKB: Q3TJP2 (UniProtKB/Swiss-Prot),   A6PWW3 (UniProtKB/Swiss-Prot),   Q3U3D8 (UniProtKB/Swiss-Prot),   Q6DFW0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006538356   ⟸   XM_006538293
- Peptide Label: isoform X1
- UniProtKB: Q3TJP2 (UniProtKB/Swiss-Prot),   A6PWW3 (UniProtKB/Swiss-Prot),   Q3U3D8 (UniProtKB/Swiss-Prot),   Q6DFW0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_082742   ⟸   NM_028466
- Peptide Label: isoform 2
- UniProtKB: A2ANZ2 (UniProtKB/TrEMBL),   Q8K3B2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000081775   ⟸   ENSMUST00000084724
Ensembl Acc Id: ENSMUSP00000103761   ⟸   ENSMUST00000108126
Ensembl Acc Id: ENSMUSP00000103762   ⟸   ENSMUST00000108127
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6DFW0-F1-model_v2 AlphaFold Q6DFW0 1-481 view protein structure

Promoters
RGD ID:6834693
Promoter ID:MM_KWN:37056
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000084724,   ENSMUST00000108126,   NM_001081343,   OTTMUST00000014851,   OTTMUST00000014852,   OTTMUST00000014853
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36435,173,061 - 35,173,561 (-)MPROMDB
RGD ID:6883030
Promoter ID:EPDNEW_M4962
Type:initiation region
Name:3110043O21Rik_1
Description:Mus musculus RIKEN cDNA 3110043O21 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38435,225,810 - 35,225,870EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920455 AgrOrtholog
Ensembl Genes ENSMUSG00000028300 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000084724 ENTREZGENE
  ENSMUST00000084724.10 UniProtKB/Swiss-Prot
  ENSMUST00000108126 ENTREZGENE
  ENSMUST00000108126.8 UniProtKB/TrEMBL
  ENSMUST00000108127 ENTREZGENE
  ENSMUST00000108127.4 UniProtKB/Swiss-Prot
InterPro C9orf72 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:73205 UniProtKB/Swiss-Prot
MGD MGI:1920455 ENTREZGENE
NCBI Gene 73205 ENTREZGENE
PANTHER GUANINE NUCLEOTIDE EXCHANGE C9ORF72 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR31855 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam C9orf72-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen C9orf72 PhenoGen
PROSITE DENN_C9ORF72 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2ANZ2 ENTREZGENE, UniProtKB/TrEMBL
  A6PWW3 ENTREZGENE
  CI072_MOUSE UniProtKB/Swiss-Prot
  Q3TJP2 ENTREZGENE
  Q3U3D8 ENTREZGENE
  Q6DFW0 ENTREZGENE
  Q8K3B2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A6PWW3 UniProtKB/Swiss-Prot
  Q3TJP2 UniProtKB/Swiss-Prot
  Q3U3D8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-07-10 C9orf72  C9orf72, member of C9orf72-SMCR8 complex  3110043O21Rik  RIKEN cDNA 3110043O21 gene  Symbol and/or name change 5135510 APPROVED